C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054908 Sugt1-201 ENSMUSG00000022024 10090 + 14:79587691-79629755 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054908
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054908 6.083±1.87 27.160±2.44 14.585±0.45 12.234±3.49 6.811±3.38 11.701±3.61 2.689±0.09 6.064±4.29 7.251±3.59 3.706±2.25 13.976±4.61 14.664±5.39 21.308±7.10 24.358±4.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MD CIL_0000MD_0002 CGP 14:79587691-79662170

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310528 SUGT1-003 protein_coding Homo_sapiens 0 1367
ENST00000343788 SUGT1-002 protein_coding Homo_sapiens 0 758
ENST00000379452 SUGT1P2-001 processed_pseudogene Homo_sapiens 0 902
ENST00000379514 SUGT1P-001 unprocessed_pseudogene Homo_sapiens 0 261
ENST00000416599 MRPS31P5-004 processed_transcript Homo_sapiens 4e-22 111
ENST00000483074 SUGT1-001 processed_transcript Homo_sapiens 0 270
ENST00000532209 RP11-23J9.6-001 unprocessed_pseudogene Homo_sapiens 2e-21 104
ENST00000604259 SUGT1P3-003 transcribed_unprocessed_pseudogene Homo_sapiens 0 226
ENST00000607588 MRPS31P5-005 processed_transcript Homo_sapiens 4e-39 165
ENST00000609175 SUGT1-004 retained_intron Homo_sapiens 0 425

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