C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343788 SUGT1-002 ENSG00000165416 9606 + 13:52652839-52687872 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343788
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343788 12.483±0.00 9.263±0.00 11.784±0.00 9.527±1.97 9.809±1.45 18.569±7.32 6.588±1.93 10.188±4.51 9.937±2.11 10.306±2.15 3.533±1.00 16.344±8.10 10.187±2.32 24.456±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MD CIL_0000MD_0001 CGP 13:52652709-52739812

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 TAS ubiquitin ligase complex
GO:0000776 TAS kinetochore
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0007067 TAS mitotic nuclear division
GO:0035872 TAS nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway
GO:0045087 TAS innate immune response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054908 Sugt1-201 protein_coding Mus_musculus 0 758
ENSMUST00000067485 Slc30a7-201 protein_coding Mus_musculus 0 307

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