C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000310528 SUGT1-003 ENSG00000165416 9606 + 13:52652866-52700909 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310528
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310528 1.507±0.00 1.184±0.00 2.015±0.00 4.345±1.24 1.323±0.32 1.653±0.48 1.410±0.18 1.167±0.79 2.080±1.76 1.234±0.69 0.975±0.00 2.766±1.07 0.587±0.29 1.788±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MD CIL_0000MD_0001 CGP 13:52652709-52739812

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 TAS ubiquitin ligase complex
GO:0000776 TAS kinetochore
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0007067 TAS mitotic nuclear division
GO:0035872 TAS nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway
GO:0045087 TAS innate immune response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054908 Sugt1-201 protein_coding Mus_musculus 0 1367
ENSMUST00000067485 Slc30a7-201 protein_coding Mus_musculus 0 508
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000002 62

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