C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor III C 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055506 Gtf3c1-201 ENSMUSG00000032777 10090 - 7:125640955-125707780 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055506
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055506 8.085±2.35 14.000±1.19 6.390±0.23 23.709±10.87 8.100±2.14 11.464±4.48 6.955±1.77 10.657±1.39 4.706±1.50 14.841±1.33 6.926±0.39 23.960±8.98 11.331±6.16 12.979±3.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FH CIL_0008FH_0002 VISTA 7:125464047-126065353
CIL_00042S CIL_00042S_0002 CGP 7:125603429-125707780
CIL_000435 CIL_000435_0002 CGP 7:125640955-125874793

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000127 IEA transcription factor TFIIIC complex
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0016020 IEA membrane
GO:0030529 IDA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356183 GTF3C1-001 protein_coding Homo_sapiens 0 4420
ENST00000561623 GTF3C1-002 protein_coding Homo_sapiens 0 4196
ENST00000564664 GTF3C1-014 nonsense_mediated_decay Homo_sapiens 0 490
ENST00000566779 GTF3C1-010 retained_intron Homo_sapiens 0 278
ENST00000568569 GTF3C1-011 protein_coding Homo_sapiens 0 399
ENST00000570129 GTF3C1-012 processed_transcript Homo_sapiens 0 261

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