C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: anterior pharynx defective 1c homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057261 Aph1c-002 ENSMUSG00000053040 10090 - 9:66819284-66834648 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMusclePlacentaTestisENSMUST00000057261
Transcript ID Brain Heart Liver Muscle Placenta Testis
ENSMUST00000057261 1.487±0.00 0.267±0.00 0.369±0.01 0.421±0.08 1.136±0.35 2.100±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098V CIL_00098V_0002 VISTA 9:66700483-67304558
CIL_00094O CIL_00094O_0002 VISTA 9:66740666-67343521

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001656 IMP metanephros development
GO:0004175 IGI endopeptidase activity
GO:0006508 ISA proteolysis
GO:0008233 ISA peptidase activity
GO:0016021 ISA integral component of membrane
GO:0016485 ISA protein processing
GO:0043085 IEA positive regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261879 APH1B-001 protein_coding Homo_sapiens 0 713
ENST00000380340 APH1B-003 nonsense_mediated_decay Homo_sapiens 0 713
ENST00000558631 APH1B-007 retained_intron Homo_sapiens 0 305
ENST00000559971 APH1B-004 nonsense_mediated_decay Homo_sapiens 0 713
ENST00000560353 APH1B-005 protein_coding Homo_sapiens 0 407
ENST00000560890 APH1B-006 protein_coding Homo_sapiens 0 638

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