C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA B230219D22 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057844 B230219D22Rik-201 ENSMUSG00000045767 10090 + 13:55693124-55703499 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057844
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057844 25.263±8.03 43.551±2.29 31.442±3.60 27.456±12.63 24.363±6.19 21.276±2.68 15.824±1.69 22.530±1.34 14.650±3.12 41.837±3.12 8.908±0.39 36.088±12.35 8.858±5.73 4.083±1.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0002 VISTA 13:55104361-55707564
CIL_0009AP CIL_0009AP_0002 VISTA 13:55516415-56118354
CIL_0005XQ CIL_0005XQ_0002 CGP 13:55635027-55703499
CIL_0005XT CIL_0005XT_0002 CGP 13:55693124-55726221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263733 FAM20B-001 protein_coding Homo_sapiens 0.000002 60
ENST00000338051 C5orf24-002 protein_coding Homo_sapiens 0 800
ENST00000369466 TTF2-001 protein_coding Homo_sapiens 0.00001 58
ENST00000376200 NALCN-201 protein_coding Homo_sapiens 0.0000001 62
ENST00000394976 C5orf24-001 protein_coding Homo_sapiens 0 865
ENST00000435259 C5orf24-004 protein_coding Homo_sapiens 0 802
ENST00000504727 C5orf24-003 protein_coding Homo_sapiens 0 861
ENST00000507053 DDX46-006 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000507390 C5orf24-006 protein_coding Homo_sapiens 0 318

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