C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium leak channel, non-selective
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376200 NALCN-201 ENSG00000102452 9606 - 13:101368545-101399154 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungMuscleENST00000376200
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Muscle
ENST00000376200 0.184±0.00 0.373±0.00 0.304±0.00 0.655±0.00 0.267±0.01 0.068±0.00 0.274±0.00 0.059±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WK CIL_0000WK_0001 CGP 13:100603927-101416492
CIL_0004G3 CIL_0004G3_0002 CGP 13:101053776-101720856

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005245 IBA voltage-gated calcium channel activity
GO:0005272 TAS sodium channel activity
GO:0005515 IPI protein binding
GO:0005886 IBA plasma membrane
GO:0006811 IEA ion transport
GO:0008219 IEA cell death
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034220 TAS ion transmembrane transport
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0055085 TAS:IEA transmembrane transport
GO:0070509 IBA calcium ion import
GO:0070588 IBA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000201 Nalcn-201 protein_coding Mus_musculus 0 885
ENSMUST00000057844 B230219D22Rik-201 protein_coding Mus_musculus 0.0000001 62

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