C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: frizzled homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057893 Fzd2-001 ENSMUSG00000050288 10090 + 11:102604396-102608058 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057893
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057893 27.838±20.70 8.445±0.81 27.364±4.50 12.092±9.19 12.801±5.90 15.078±1.38 3.792±1.04 4.234±1.21 0.528±0.50 22.062±1.75 0.480±0.11 30.857±15.73 2.549±2.86 0.676±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0005IY CIL_0005IY_0002 CGP 11:102604396-102682237

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001944 IBA vasculature development
GO:0003149 IGI membranous septum morphogenesis
GO:0003150 IGI muscular septum morphogenesis
GO:0003151 IGI outflow tract morphogenesis
GO:0004930 IEA G-protein coupled receptor activity
GO:0005515 IPI protein binding
GO:0005737 IBA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0007199 IBA G-protein coupled receptor signaling pathway coupled to cGMP nucleotide second messenger
GO:0007223 IBA Wnt signaling pathway, calcium modulating pathway
GO:0007267 IDA cell-cell signaling
GO:0007409 IBA axonogenesis
GO:0007420 IBA brain development
GO:0007608 IMP sensory perception of smell
GO:0008406 IBA gonad development
GO:0016021 IEA integral component of membrane
GO:0017147 IBA Wnt-protein binding
GO:0030165 IBA PDZ domain binding
GO:0030825 IEA positive regulation of cGMP metabolic process
GO:0030855 IDA epithelial cell differentiation
GO:0032589 IBA neuron projection membrane
GO:0042813 IDA Wnt-activated receptor activity
GO:0045177 IBA apical part of cell
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0051091 IEA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0060022 IGI hard palate development
GO:0060070 IBA canonical Wnt signaling pathway
GO:0060119 IGI inner ear receptor cell development
GO:0060412 IGI ventricular septum morphogenesis
GO:0090103 IGI cochlea morphogenesis
GO:0090179 IGI planar cell polarity pathway involved in neural tube closure

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000084055 fzd7a-001 protein_coding Danio_rerio 0 599
ENSDART00000060789 fzd1-201 protein_coding Danio_rerio 0 409
ENSDART00000112320 fzd4-201 protein_coding Danio_rerio 0.000000000000002 90
ENST00000286201 FZD7-001 protein_coding Homo_sapiens 0 928
ENST00000287934 FZD1-001 protein_coding Homo_sapiens 0 1199
ENST00000315323 FZD2-001 protein_coding Homo_sapiens 0 2564
ENST00000374694 FZD8-001 protein_coding Homo_sapiens 0 320

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