C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peroxisome proliferator activated receptor alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057979 Ppara-003 ENSMUSG00000022383 10090 + 15:85736131-85801748 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverLungOvaryPlacentaTestisENSMUST00000057979
Transcript ID Adrenal Brain Colon Liver Lung Ovary Placenta Testis
ENSMUST00000057979 1.161±0.36 0.266±0.00 0.741±0.00 3.536±0.01 0.222±0.00 0.971±0.18 0.097±0.05 0.248±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KW CIL_0008KW_0002 VISTA 15:85164142-85764949
CIL_000469 CIL_000469_0002 CGP 15:85535439-85802819
CIL_0001Q1 CIL_0001Q1_0002 CGP 15:85734983-85811697

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001190 IDA RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IMP sequence-specific DNA binding transcription factor activity
GO:0003707 TAS steroid hormone receptor activity
GO:0004872 IDA receptor activity
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0006006 TAS glucose metabolic process
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006629 TAS lipid metabolic process
GO:0006631 TAS fatty acid metabolic process
GO:0008144 ISS drug binding
GO:0008270 IEA zinc ion binding
GO:0008289 IDA lipid binding
GO:0008544 IMP epidermis development
GO:0010468 IMP regulation of gene expression
GO:0019217 IMP regulation of fatty acid metabolic process
GO:0030522 IEA intracellular receptor signaling pathway
GO:0032099 IMP negative regulation of appetite
GO:0032922 IDA circadian regulation of gene expression
GO:0042060 IMP wound healing
GO:0042752 IDA regulation of circadian rhythm
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA sequence-specific DNA binding
GO:0045722 IMP positive regulation of gluconeogenesis
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046321 IMP positive regulation of fatty acid oxidation
GO:0046982 TAS protein heterodimerization activity
GO:0070166 IMP enamel mineralization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262735 PPARA-201 protein_coding Homo_sapiens 0 1474
ENST00000402126 PPARA-008 protein_coding Homo_sapiens 0 1474
ENST00000407236 PPARA-001 protein_coding Homo_sapiens 0 1474
ENST00000493286 PPARA-005 retained_intron Homo_sapiens 0 736

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