C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hnRNP-associated with lethal yellow
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058089 Raly-001 ENSMUSG00000027593 10090 + 2:154791157-154867261 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058089
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058089 82.254±37.81 73.331±11.94 53.233±19.65 31.722±20.48 45.045±16.89 63.767±4.97 29.400±1.30 45.633±7.44 72.222±53.49 54.234±4.23 11.054±4.82 102.447±22.96 39.731±25.93 17.486±3.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098F CIL_00098F_0002 VISTA 2:154750090-155352094

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000246194 RALY-002 protein_coding Homo_sapiens 0 640
ENST00000333552 RALY-005 protein_coding Homo_sapiens 0 357
ENST00000375114 RALY-001 protein_coding Homo_sapiens 0 1266
ENST00000413297 RALY-003 protein_coding Homo_sapiens 0 370
ENST00000442805 RALY-007 protein_coding Homo_sapiens 0 887
ENST00000448364 RALY-004 protein_coding Homo_sapiens 0 455
ENST00000488227 RALY-009 processed_transcript Homo_sapiens 0 189
ENST00000493399 RALY-006 processed_transcript Homo_sapiens 0 457

Loading