C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 4D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058796 Kdm4d-001 ENSMUSG00000053914 10090 - 9:14462548-14500482 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058796
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058796 0.081±0.03 0.207±0.09 0.027±0.00 0.151±0.14 0.173±0.04 0.081±0.02 0.010±0.00 0.069±0.05 0.018±0.01 0.080±0.04 0.022±0.00 0.245±0.10 0.022±0.01 21.508±6.93

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0032454 IEA histone demethylase activity (H3-K9 specific)
GO:0033169 IMP histone H3-K9 demethylation
GO:0046872 IEA metal ion binding
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000034084 kdm4b-201 protein_coding Danio_rerio 0 324
ENSDART00000128161 kdm4b-001 protein_coding Danio_rerio 0 324
ENST00000335080 KDM4D-001 protein_coding Homo_sapiens 0 1044
ENST00000450979 KDM4E-001 protein_coding Homo_sapiens 0 804
ENST00000536741 KDM4D-002 protein_coding Homo_sapiens 0 1044
ENST00000545950 RP11-735A19.2-001 unprocessed_pseudogene Homo_sapiens 0 822
ENST00000610872 KDM4D-201 protein_coding Homo_sapiens 0 1044

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