C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000128161 kdm4b-001 ENSDARG00000042729 7955 + 22:3888478-3981093 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000128161
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000128161 10.560±6.84 3.696±4.23 3.495±0.00 0.852±0.00 8.428±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GV CIL_0005GV_0001 CGP 22:3857038-3981093

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025036 Kdm4b-001 protein_coding Mus_musculus 0 730
ENSMUST00000058796 Kdm4d-001 protein_coding Mus_musculus 0 324
ENSMUST00000086835 Kdm4b-002 protein_coding Mus_musculus 0 730
ENSMUST00000115647 Kdm4d-002 protein_coding Mus_musculus 0 324
ENSMUST00000139679 Kdm4b-004 protein_coding Mus_musculus 0 387
ENSMUST00000184843 Gm27205-001 processed_pseudogene Mus_musculus 0 392
ENST00000159111 KDM4B-001 protein_coding Homo_sapiens 0 702
ENST00000372396 KDM4A-001 protein_coding Homo_sapiens 0 468
ENST00000381759 KDM4B-011 protein_coding Homo_sapiens 0 702
ENST00000463151 KDM4A-002 processed_transcript Homo_sapiens 0 394
ENST00000485249 KDM4A-003 processed_transcript Homo_sapiens 0 370
ENST00000536461 KDM4B-002 protein_coding Homo_sapiens 0 702
ENST00000592175 KDM4B-005 processed_transcript Homo_sapiens 0 357
ENST00000611640 KDM4B-201 protein_coding Homo_sapiens 0 702

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