C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 4D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000335080 KDM4D-001 ENSG00000186280 9606 + 11:94973681-94999518 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyOvaryPlacentaTestisENST00000335080
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Ovary Placenta Testis
ENST00000335080 0.108±0.00 0.260±0.00 0.320±0.00 0.120±0.00 0.103±0.05 0.209±0.00 0.312±0.17 0.233±0.05 21.391±1.75

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0032454 IDA histone demethylase activity (H3-K9 specific)
GO:0033169 IDA histone H3-K9 demethylation
GO:0046872 IEA metal ion binding
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process
GO:0072562 IDA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115647 Kdm4d-002 protein_coding Mus_musculus 0 1044
ENSMUST00000058796 Kdm4d-001 protein_coding Mus_musculus 0 1044
ENSMUST00000184843 Gm27205-001 processed_pseudogene Mus_musculus 0 756
ENSMUST00000086835 Kdm4b-002 protein_coding Mus_musculus 0 416
ENSMUST00000025036 Kdm4b-001 protein_coding Mus_musculus 0 416
ENSMUST00000139679 Kdm4b-004 protein_coding Mus_musculus 0 233

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