C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transforming, acidic coiled-coil containing protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059145 Tacc2-202 ENSMUSG00000030852 10090 + 7:130577484-130764784 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000059145
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000059145 2.198±0.62 1.944±0.00 6.823±1.10 2.358±1.60 3.118±0.74 13.105±0.00 5.126±2.19 1.193±0.41 3.526±1.01 26.762±5.59 15.131±0.00 5.878±3.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_00095T CIL_00095T_0002 VISTA 7:130125765-130727321
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_00047F CIL_00047F_0003 CGP 7:130532523-130764784
CIL_0001BC CIL_0001BC_0002 CGP 7:130577484-130825897

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0008283 IMP cell proliferation
GO:0019904 IPI protein domain specific binding
GO:0021987 IMP cerebral cortex development
GO:0022008 IMP neurogenesis
GO:0022027 IMP interkinetic nuclear migration
GO:0030953 IDA astral microtubule organization
GO:0032886 IMP regulation of microtubule-based process
GO:0035257 ISO nuclear hormone receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260733 TACC2-008 protein_coding Homo_sapiens 0 2121
ENST00000334433 TACC2-201 protein_coding Homo_sapiens 0 2124
ENST00000358010 TACC2-202 protein_coding Homo_sapiens 0 2124
ENST00000360561 TACC2-007 protein_coding Homo_sapiens 0 1330
ENST00000368997 TACC2-027 retained_intron Homo_sapiens 0 1206
ENST00000368999 TACC2-010 protein_coding Homo_sapiens 0 3476
ENST00000369000 TACC2-005 protein_coding Homo_sapiens 0 1336
ENST00000369001 TACC2-006 protein_coding Homo_sapiens 0 1206
ENST00000369004 TACC2-009 protein_coding Homo_sapiens 0 2202
ENST00000369005 TACC2-001 protein_coding Homo_sapiens 0 2124
ENST00000440764 TACC2-018 nonsense_mediated_decay Homo_sapiens 0 544
ENST00000453444 TACC2-203 protein_coding Homo_sapiens 0 1334
ENST00000465600 TACC2-029 retained_intron Homo_sapiens 0 870
ENST00000490979 TACC2-016 protein_coding Homo_sapiens 0 246
ENST00000492237 TACC2-021 processed_transcript Homo_sapiens 0 217
ENST00000493951 TACC2-020 processed_transcript Homo_sapiens 0 270
ENST00000496913 TACC2-012 protein_coding Homo_sapiens 0 634
ENST00000505639 TACC2-017 protein_coding Homo_sapiens 0 222
ENST00000508411 TACC2-014 protein_coding Homo_sapiens 2e-37 159
ENST00000513429 TACC2-002 protein_coding Homo_sapiens 0 2124
ENST00000514539 TACC2-015 protein_coding Homo_sapiens 0 1334
ENST00000515273 TACC2-003 protein_coding Homo_sapiens 0 1334
ENST00000515603 TACC2-004 protein_coding Homo_sapiens 0 1334

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