C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 9B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059401 Atg9b-001 ENSMUSG00000038295 10090 - 5:24384181-24392143 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonLiverLungOvaryPlacentaTestisENSMUST00000059401
Transcript ID Bladder Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000059401 2.135±0.69 2.726±0.77 0.479±0.00 0.859±0.70 3.761±0.20 2.018±0.24 1.051±0.60 0.611±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_0004OG CIL_0004OG_0002 CGP 5:24319589-24384474
CIL_0004OH CIL_0004OH_0002 CGP 5:24364810-24392143
CIL_0004O6 CIL_0004O6_0002 CGP 5:24384181-24410054

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IBA autophagic vacuole assembly
GO:0000407 IBA pre-autophagosomal structure
GO:0000422 IBA mitochondrion degradation
GO:0003674 ND molecular_function
GO:0005737 IDA cytoplasm
GO:0005776 IDA autophagic vacuole
GO:0006914 IEA autophagy
GO:0016021 IBA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0034497 IBA protein localization to pre-autophagosomal structure
GO:0034727 IBA piecemeal microautophagy of nucleus
GO:0044805 IBA late nucleophagy

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000466157 ATG9B-011 processed_transcript Homo_sapiens 0 686
ENST00000469530 ATG9B-007 protein_coding Homo_sapiens 0 2920
ENST00000473134 ATG9B-008 retained_intron Homo_sapiens 0 475
ENST00000473409 ATG9B-005 processed_transcript Homo_sapiens 0 1026
ENST00000605952 ATG9B-001 nonsense_mediated_decay Homo_sapiens 0 2968
ENST00000611177 ATG9B-003 processed_transcript Homo_sapiens 0 1242
ENST00000617967 ATG9B-002 processed_transcript Homo_sapiens 0 1051

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