C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004OG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000055118-ENSG00000164867 CGP 9606 7:150944961-151014588
GeneTranscriptPositionBiotype
ENSG00000055118 (KCNH2)
potassium voltage-gated channel, subfamily H (eag-related), member 2 		ENST00000262186 (KCNH2-001) 150944961-150978315 protein_coding
ENST00000330883 (KCNH2-004) 150944961-150955906 protein_coding
ENST00000430723 (KCNH2-201) 150949899-150978100 protein_coding
ENST00000461280 (KCNH2-008) 150949423-150955810 retained_intron
ENST00000473610 (KCNH2-005) 150949416-150955828 retained_intron
ENST00000532957 (KCNH2-002) 150949415-150978136 retained_intron
ENSG00000164867 (NOS3)
nitric oxide synthase 3 (endothelial cell) 		ENST00000297494 (NOS3-001) 150990995-151014588 protein_coding
ENST00000460603 (NOS3-008) 151001867-151002963 processed_transcript
ENST00000461406 (NOS3-002) 150991104-151014474 protein_coding
ENST00000467517 (NOS3-005) 150993804-151003935 protein_coding
ENST00000468293 (NOS3-010) 151010520-151013378 processed_transcript
ENST00000473057 (NOS3-009) 151008874-151009570 processed_transcript
ENST00000475017 (NOS3-006) 151008937-151012065 protein_coding
ENST00000475454 (NOS3-013) 151012406-151013529 retained_intron
ENST00000477227 (NOS3-011) 151010533-151014289 processed_transcript
ENST00000484524 (NOS3-004) 150993804-151003935 protein_coding
ENSG00000181652 (ATG9B)
autophagy related 9B 		ENST00000404733 (ATG9B-012) 151013295-151014304 retained_intron
ENST00000466157 (ATG9B-011) 151021188-151024494 processed_transcript
ENST00000469530 (ATG9B-007) 151015182-151024423 protein_coding
ENST00000471797 (ATG9B-010) 151014871-151015996 retained_intron
ENST00000473134 (ATG9B-008) 151020918-151023516 retained_intron
ENST00000473409 (ATG9B-005) 151019837-151024499 processed_transcript
ENST00000476282 (ATG9B-009) 151013854-151015589 processed_transcript
ENST00000498521 (ATG9B-020) 151012209-151012785 processed_transcript
ENST00000605952 (ATG9B-001) 151012214-151024499 nonsense_mediated_decay
ENST00000611177 (ATG9B-003) 151015172-151018801 processed_transcript
ENST00000617967 (ATG9B-002) 151013238-151024465 processed_transcript

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0004OG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038319-ENSMUSG00000028978 CGP 10090 5:24319589-24384474
GeneTranscriptPositionBiotype
ENSMUSG00000028978 (Nos3)
nitric oxide synthase 3, endothelial cell 		ENSMUST00000030834 (Nos3-001) 24364810-24384474 protein_coding
ENSMUST00000115090 (Nos3-002) 24364810-24384327 protein_coding
ENSMUSG00000038295 (Atg9b)
autophagy related 9B 		ENSMUST00000059401 (Atg9b-001) 24384181-24392143 protein_coding
ENSMUST00000128831 (Atg9b-002) 24387105-24387966 processed_transcript
ENSMUST00000138716 (Atg9b-003) 24384620-24390635 processed_transcript
ENSMUSG00000038319 (Kcnh2)
potassium voltage-gated channel, subfamily H (eag-related), member 2 		ENSMUST00000036092 (Kcnh2-001) 24319589-24351604 protein_coding
ENSMUST00000115098 (Kcnh2-002) 24319589-24329591 protein_coding
ENSMUST00000126791 (Kcnh2-003) 24324490-24325789 processed_transcript
ENSMUST00000129246 (Kcnh2-005) 24320083-24322254 processed_transcript
ENSMUST00000142197 (Kcnh2-004) 24325448-24326519 processed_transcript
ENSMUSG00000086729 (Gm15589)
predicted gene 15589 		ENSMUST00000144193 (Gm15589-001) 24333923-24337216 antisense
ENSMUSG00000086769 (Gm15587)
predicted gene 15587 		ENSMUST00000146326 (Gm15587-001) 24366192-24383582 antisense
ENSMUST00000156403 (Gm15587-002) 24369187-24383614 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OG_0001ENSG00000055118ENST00000262186ENST00000330883ENST00000430723ENST00000461280ENST00000473610ENST00000532957ENSG00000164867ENST00000297494ENST00000460603ENST00000461406ENST00000467517ENST00000468293ENST00000473057ENST00000475017ENST00000475454ENST00000477227ENST00000484524ENSG00000181652ENST00000404733ENST00000466157ENST00000469530ENST00000471797ENST00000473134ENST00000473409ENST00000476282ENST00000498521ENST00000605952ENST00000611177ENST00000617967CIL_0004OG_0002ENSMUSG00000028978ENSMUST00000030834ENSMUST00000115090ENSMUSG00000038295ENSMUST00000059401ENSMUST00000128831ENSMUST00000138716ENSMUSG00000038319ENSMUST00000036092ENSMUST00000115098ENSMUST00000126791ENSMUST00000129246ENSMUST00000142197ENSMUSG00000086729ENSMUST00000144193ENSMUSG00000086769ENSMUST00000146326ENSMUST00000156403
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004OG_0001ENSG00000055118ENST00000262186ENST00000330883ENST00000430723ENST00000461280ENST00000532957ENSG00000164867ENST00000297494ENST00000461406ENST00000467517ENST00000484524ENSG00000181652ENST00000404733ENST00000611177CIL_0004OG_0002ENSMUSG00000028978ENSMUST00000030834ENSMUST00000115090ENSMUSG00000038295ENSMUST00000059401ENSMUST00000138716ENSMUSG00000038319ENSMUST00000036092ENSMUST00000115098ENSMUST00000126791ENSMUST00000129246ENSMUST00000142197ENSMUSG00000086729ENSMUST00000144193ENSMUSG00000086769ENSMUST00000146326
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000055118 ENST00000262186 N/A 0.546±0.00 N/A 1.672±0.98 N/A 1.168±1.07 7.506±5.88 0.320±0.00 N/A 0.698±0.00 N/A 3.549±0.00 N/A 5.928±0.00
ENST00000330883 0.110±0.00 N/A N/A 0.906±0.00 0.148±0.00 5.046±4.66 N/A N/A N/A 0.347±0.00 N/A 5.120±4.45 0.806±0.23 7.935±3.50
ENST00000430723 N/A N/A 0.066±0.00 N/A N/A N/A N/A N/A 0.085±0.00 N/A 0.011±0.00 0.679±0.00 0.539±0.00 N/A
ENST00000461280 0.321±0.00 2.885±0.00 N/A 2.682±0.00 0.192±0.00 5.398±4.95 N/A 0.490±0.00 0.787±0.00 1.263±0.00 N/A 2.283±2.45 0.355±0.00 5.387±1.69
ENST00000473610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532957 N/A N/A N/A 1.491±0.00 N/A N/A 24.607±0.00 N/A N/A 0.127±0.00 N/A 1.017±0.82 N/A N/A
ENSG00000164867 ENST00000297494 6.180±0.00 3.001±0.00 N/A 1.182±0.00 0.411±0.00 1.002±0.94 2.073±0.00 1.179±0.99 1.300±0.00 3.436±0.00 0.822±0.30 3.139±1.96 4.161±2.21 2.314±0.00
ENST00000460603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461406 10.010±0.00 6.136±0.00 N/A 2.559±0.00 4.821±0.00 3.047±0.00 1.739±0.00 1.395±0.00 1.287±0.00 5.845±0.00 1.225±0.00 5.871±3.08 N/A N/A
ENST00000467517 N/A N/A 0.396±0.00 N/A 0.239±0.00 N/A N/A N/A 1.205±0.00 N/A N/A N/A N/A N/A
ENST00000468293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484524 N/A N/A N/A 1.555±0.00 N/A N/A N/A N/A N/A 2.923±0.00 N/A N/A N/A N/A
ENSG00000181652 ENST00000404733 25.726±0.00 28.406±0.00 N/A N/A N/A 9.608±0.00 N/A 5.929±0.00 5.391±0.00 N/A N/A N/A N/A N/A
ENST00000466157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473134 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000605952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611177 N/A N/A N/A 0.253±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.206±0.00 13.672±0.00
ENST00000617967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028978 ENSMUST00000030834 14.060±5.67 11.282±2.53 3.560±0.05 3.370±0.38 16.599±7.17 2.100±0.41 8.339±2.68 4.091±0.44 1.197±0.36 8.222±1.54 2.243±0.72 7.339±2.45 1.468±0.41 0.972±0.00
ENSMUST00000115090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.193±0.00 N/A N/A
ENSMUSG00000038295 ENSMUST00000059401 N/A N/A 2.135±0.69 N/A 2.726±0.77 0.479±0.00 N/A N/A 0.859±0.70 3.761±0.20 N/A 2.018±0.24 1.051±0.60 0.611±0.00
ENSMUST00000128831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138716 N/A N/A N/A N/A N/A N/A N/A N/A 2.464±0.00 N/A N/A N/A 1.234±0.30 N/A
ENSMUSG00000038319 ENSMUST00000036092 5.260±2.12 10.091±1.27 3.811±0.04 8.493±0.52 0.975±0.37 4.301±1.59 11.361±3.77 0.351±0.08 0.168±0.08 3.050±1.54 0.071±0.01 10.617±4.12 1.362±0.72 3.144±1.27
ENSMUST00000115098 13.385±4.29 4.690±0.87 14.725±0.05 N/A 1.930±0.87 3.558±1.19 15.722±4.74 0.870±0.26 0.058±0.03 4.263±0.75 0.558±0.17 13.977±5.79 0.759±0.62 1.881±0.29
ENSMUST00000126791 N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A N/A N/A
ENSMUST00000129246 N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A 0.426±0.00 N/A N/A N/A
ENSMUST00000142197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.885±0.00 N/A N/A N/A
ENSMUSG00000086729 ENSMUST00000144193 0.393±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.368±0.03
ENSMUSG00000086769 ENSMUST00000146326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.694±0.00 N/A 1.701±0.54
ENSMUST00000156403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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