C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: autophagy related 9B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038295 Atg9b 10090 - 5:24384181-24392143 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000059401 Atg9b-001 24384181-24392143 protein_coding
  ENSMUST00000128831 Atg9b-002 24387105-24387966 processed_transcript
  ENSMUST00000138716 Atg9b-003 24384620-24390635 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonLiverLungOvaryPlacentaTestisENSMUST00000059401ENSMUST00000138716
Transcript ID Bladder Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000059401 2.135±0.69 2.726±0.77 0.479±0.00 0.859±0.70 3.761±0.20 2.018±0.24 1.051±0.60 0.611±0.00
ENSMUST00000138716 N/A N/A N/A 2.464±0.00 N/A N/A 1.234±0.30 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_0004OG CIL_0004OG_0002 CGP 5:24319589-24384474
CIL_0004OH CIL_0004OH_0002 CGP 5:24364810-24392143
CIL_0004O6 CIL_0004O6_0002 CGP 5:24384181-24410054

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 IBA autophagic vacuole assembly
GO:0000407 IBA pre-autophagosomal structure
GO:0000422 IBA mitochondrion degradation
GO:0003674 ND molecular_function
GO:0005737 IDA cytoplasm
GO:0005776 IDA autophagic vacuole
GO:0006914 IEA autophagy
GO:0016021 IBA integral component of membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0034497 IBA protein localization to pre-autophagosomal structure
GO:0034727 IBA piecemeal microautophagy of nucleus
GO:0044805 IBA late nucleophagy

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055292 atg9b ATG9 autophagy related 9 homolog B (S. cerevisiae) protein_coding Danio_rerio
ENSG00000181652 ATG9B autophagy related 9B protein_coding Homo_sapiens

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