C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane emp24 domain trafficking protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060226 Tmed2-001 ENSMUSG00000029390 10090 + 5:124540695-124550506 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060226
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060226 75.485±9.99 103.680±64.17 92.025±8.98 38.198±23.28 86.565±51.30 165.724±34.85 15.715±2.41 62.039±19.27 84.978±19.35 80.570±16.97 8.059±1.73 162.099±101.53 92.661±66.01 16.887±6.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003J9 CIL_0003J9_0002 CGP 5:124493082-124550506
CIL_0003J8 CIL_0003J8_0002 CGP 5:124540695-124569660

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001893 IMP maternal placenta development
GO:0005515 IEA protein binding
GO:0005783 ISS endoplasmic reticulum
GO:0005793 ISS endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 ISS Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0007030 ISS Golgi organization
GO:0016021 ISS integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030137 ISS COPI-coated vesicle
GO:0034260 ISS negative regulation of GTPase activity
GO:0042589 ISS zymogen granule membrane
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0048598 IMP embryonic morphogenesis
GO:0072661 ISS protein targeting to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262225 TMED2-001 protein_coding Homo_sapiens 0 1157
ENST00000438031 TMED2-003 protein_coding Homo_sapiens 0 584
ENST00000460282 RP11-641C17.3-001 processed_pseudogene Homo_sapiens 0 497
ENST00000509052 TMED2-004 protein_coding Homo_sapiens 0 856
ENST00000543425 TMED2-006 retained_intron Homo_sapiens 0 686
ENST00000544188 TMED2-005 retained_intron Homo_sapiens 0 490

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