C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane emp24 domain trafficking protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262225 TMED2-001 ENSG00000086598 9606 + 12:123584531-123598577 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000262225
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000262225 11.652±0.00 24.223±0.00 46.058±0.00 31.330±0.00 4.378±0.00 46.982±0.00 37.191±0.00 31.665±0.00 57.392±26.84 30.194±26.47 20.928±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003J9 CIL_0003J9_0001 CGP 12:123470054-123598577
CIL_0003J8 CIL_0003J8_0001 CGP 12:123584531-123620941

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0001893 IEA maternal placenta development
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IDA Golgi apparatus
GO:0006810 IEA transport
GO:0006886 IDA intracellular protein transport
GO:0006888 TAS ER to Golgi vesicle-mediated transport
GO:0007030 IMP Golgi organization
GO:0016021 IEA:ISS integral component of membrane
GO:0030137 ISS COPI-coated vesicle
GO:0034260 IDA negative regulation of GTPase activity
GO:0035459 TAS cargo loading into vesicle
GO:0042589 ISS zymogen granule membrane
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0048208 TAS COPII vesicle coating
GO:0048598 IEA embryonic morphogenesis
GO:0072661 IDA protein targeting to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000060226 Tmed2-001 protein_coding Mus_musculus 0 1157
ENSMUST00000182663 Gm10698-001 processed_pseudogene Mus_musculus 0 833
ENSMUST00000124529 Tmed2-003 protein_coding Mus_musculus 0 778
ENSMUST00000135464 Tmed2-002 protein_coding Mus_musculus 0 662
ENSMUST00000140299 Tmem5-001 protein_coding Mus_musculus 0 412

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