C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003J9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000188026-ENSG00000086598 CGP 9606 12:123470054-123598577
GeneTranscriptPositionBiotype
ENSG00000086598 (TMED2)
transmembrane emp24 domain trafficking protein 2 		ENST00000262225 (TMED2-001) 123584531-123598577 protein_coding
ENST00000438031 (TMED2-003) 123584533-123590446 protein_coding
ENST00000509052 (TMED2-004) 123585562-123597093 protein_coding
ENST00000543425 (TMED2-006) 123584549-123597342 retained_intron
ENST00000544188 (TMED2-005) 123584598-123586960 retained_intron
ENSG00000184209 (SNRNP35)
small nuclear ribonucleoprotein 35kDa (U11/U12) 		ENST00000350887 (SNRNP35-003) 123464506-123466390 protein_coding
ENST00000412157 (SNRNP35-002) 123459523-123466299 protein_coding
ENST00000526639 (SNRNP35-001) 123457641-123466936 protein_coding
ENST00000527158 (SNRNP35-004) 123458119-123473154 processed_transcript
ENST00000529201 (SNRNP35-007) 123458127-123464899 processed_transcript
ENST00000529904 (SNRNP35-005) 123458088-123459216 processed_transcript
ENSG00000188026 (RILPL1)
Rab interacting lysosomal protein-like 1 		ENST00000340724 (RILPL1-003) 123472068-123514428 protein_coding
ENST00000376874 (RILPL1-001) 123470054-123533718 protein_coding
ENST00000544468 (RILPL1-004) 123472167-123484974 protein_coding
ENSG00000266655 (MIR3908)
microRNA 3908 		ENST00000579798 (MIR3908-201) 123536409-123536534 miRNA
ENSG00000274427 (RP11-972P1.10)
 ENST00000610631 (RP11-972P1.10-001) 123515275-123515513 sense_intronic
ENSG00000278112 (RP11-972P1.11)
 ENST00000615987 (RP11-972P1.11-001) 123519390-123519856 sense_intronic
ENSG00000280328 (RP11-972P1.7)
 ENST00000623184 (RP11-972P1.7-001) 123472200-123476093 TEC
CIL_0003J9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029392-ENSMUSG00000029390 CGP 10090 5:124493082-124550506
GeneTranscriptPositionBiotype
ENSMUSG00000029390 (Tmed2)
transmembrane emp24 domain trafficking protein 2 		ENSMUST00000060226 (Tmed2-001) 124540695-124550506 protein_coding
ENSMUST00000124529 (Tmed2-003) 124541329-124549410 protein_coding
ENSMUST00000135464 (Tmed2-002) 124543080-124550496 protein_coding
ENSMUSG00000029392 (Rilpl1)
Rab interacting lysosomal protein-like 1 		ENSMUST00000062153 (Rilpl1-201) 124493082-124531391 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003J9_0001ENSG00000086598ENST00000262225ENST00000438031ENST00000509052ENST00000543425ENST00000544188ENSG00000184209ENST00000350887ENST00000412157ENST00000526639ENST00000527158ENST00000529201ENST00000529904ENSG00000188026ENST00000340724ENST00000376874ENST00000544468ENSG00000266655ENST00000579798ENSG00000274427ENST00000610631ENSG00000278112ENST00000615987ENSG00000280328ENST00000623184CIL_0003J9_0002ENSMUSG00000029390ENSMUST00000060226ENSMUST00000124529ENSMUST00000135464ENSMUSG00000029392ENSMUST00000062153
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003J9_0001ENSG00000086598ENST00000262225ENST00000438031ENST00000543425ENST00000544188ENSG00000184209ENST00000350887ENST00000526639ENSG00000188026ENST00000340724ENST00000376874ENST00000544468ENSG00000266655ENST00000579798ENSG00000274427ENST00000610631ENSG00000278112ENST00000615987ENSG00000280328ENST00000623184CIL_0003J9_0002ENSMUSG00000029390ENSMUST00000060226ENSMUST00000124529ENSMUST00000135464ENSMUSG00000029392ENSMUST00000062153
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000086598 ENST00000262225 N/A N/A 11.652±0.00 24.223±0.00 46.058±0.00 31.330±0.00 4.378±0.00 46.982±0.00 37.191±0.00 31.665±0.00 N/A 57.392±26.84 30.194±26.47 20.928±0.00
ENST00000438031 N/A N/A N/A N/A N/A N/A 7.479±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000509052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543425 42.044±0.00 15.597±0.00 4.807±0.00 27.340±0.00 45.494±0.00 8.648±0.00 N/A N/A N/A N/A 2.640±0.00 38.779±0.00 27.879±0.00 23.701±12.55
ENST00000544188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 153.189±0.00 144.143±0.00 64.140±0.00
ENSG00000184209 ENST00000350887 10.624±0.00 24.771±0.00 N/A 14.418±0.00 18.277±0.00 11.635±0.00 14.911±0.00 14.375±0.00 11.276±0.00 8.472±0.00 33.467±0.00 16.832±5.42 21.820±4.53 14.615±7.87
ENST00000412157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526639 N/A N/A N/A N/A 0.374±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.601±0.00
ENST00000527158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188026 ENST00000340724 N/A N/A N/A 1.754±0.00 N/A N/A N/A N/A N/A N/A N/A 0.645±0.00 N/A 2.057±0.00
ENST00000376874 2.145±0.00 3.746±0.00 0.357±0.00 2.122±0.27 1.423±1.02 3.517±0.00 5.862±4.90 1.092±0.74 1.126±0.60 0.536±0.00 8.468±4.40 2.872±1.69 7.391±1.54 2.488±0.00
ENST00000544468 N/A N/A N/A N/A N/A N/A 25.792±0.00 N/A N/A 4.398±0.00 N/A 2.109±0.00 N/A N/A
ENSG00000266655 ENST00000579798 0.090±0.00 N/A N/A 0.078±0.00 N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A
ENSG00000274427 ENST00000610631 0.119±0.00 0.298±0.00 N/A 0.729±0.00 0.992±0.42 0.272±0.00 0.227±0.00 1.044±0.00 0.248±0.00 2.197±1.65 0.575±0.00 5.469±6.95 0.760±0.20 0.251±0.12
ENSG00000278112 ENST00000615987 0.275±0.00 0.831±0.00 0.122±0.00 0.250±0.10 0.485±0.00 0.286±0.00 0.049±0.00 0.420±0.00 N/A 0.354±0.25 0.315±0.00 0.566±0.41 0.221±0.08 0.149±0.01
ENSG00000280328 ENST00000623184 N/A N/A 0.690±0.00 1.585±0.00 0.366±0.00 0.587±0.27 N/A N/A N/A 1.042±0.13 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029390 ENSMUST00000060226 75.485±9.99 103.680±64.17 92.025±8.98 38.198±23.28 86.565±51.30 165.724±34.85 15.715±2.41 62.039±19.27 84.978±19.35 80.570±16.97 8.059±1.73 162.099±101.53 92.661±66.01 16.887±6.33
ENSMUST00000124529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 43.280±0.00 N/A N/A
ENSMUST00000135464 N/A N/A N/A N/A 22.522±11.82 N/A 15.953±7.80 11.146±0.09 32.322±0.00 N/A 46.616±8.62 47.019±16.91 76.620±12.88 N/A
ENSMUSG00000029392 ENSMUST00000062153 3.815±1.29 3.945±0.97 10.277±0.82 15.557±15.67 4.090±1.49 2.259±0.45 15.669±2.29 4.079±0.84 0.872±0.55 9.285±0.58 51.954±17.88 8.470±3.43 9.075±3.86 1.441±0.32

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