C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB2A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060232 Rab2a-001 ENSMUSG00000047187 10090 + 4:8535644-8607778 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060232
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060232 50.604±10.57 314.941±56.40 64.702±2.42 77.052±18.86 87.212±59.23 137.305±22.87 44.548±2.62 55.886±8.16 31.464±7.41 98.821±30.57 82.636±8.23 123.567±50.15 48.567±15.03 29.278±9.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003G7 CIL_0003G7_0002 CGP 4:8143362-8607778
CIL_000379 CIL_000379_0002 CGP 4:8535644-8867659

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 ISS GTPase activity
GO:0005515 IEA protein binding
GO:0005525 ISS GTP binding
GO:0005765 IEA lysosomal membrane
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0006886 TAS intracellular protein transport
GO:0007030 IEA Golgi organization
GO:0007264 IEA small GTPase mediated signal transduction
GO:0016192 IEA vesicle-mediated transport
GO:0019003 ISS GDP binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262646 RAB2A-001 protein_coding Homo_sapiens 0 2423
ENST00000396696 RAB2A-003 retained_intron Homo_sapiens 0 562
ENST00000429861 RAB2A-004 retained_intron Homo_sapiens 0 627
ENST00000452437 RAB2A-002 protein_coding Homo_sapiens 0 409
ENST00000466595 RAB2A-006 nonsense_mediated_decay Homo_sapiens 0 819
ENST00000481569 RAB2A-005 retained_intron Homo_sapiens 0 235
ENST00000525529 RAB2A-010 retained_intron Homo_sapiens 0 457
ENST00000529579 RAB2A-011 protein_coding Homo_sapiens 0 568
ENST00000530071 RAB2A-012 processed_transcript Homo_sapiens 0 811
ENST00000531098 RAB2A-008 protein_coding Homo_sapiens 0 193
ENST00000531289 RAB2A-007 protein_coding Homo_sapiens 0 987
ENST00000534260 RAB2A-009 nonsense_mediated_decay Homo_sapiens 0 326

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