C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 8 family, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000148138 lrrc8a-001 ENSDARG00000032188 7955 + 21:4514314-4562968 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000148138
Transcript ID Brain Heart Liver Muscle
ENSDART00000148138 3.874±0.00 2.843±0.00 1.354±0.00 2.318±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000060531 Lrrc8d-001 protein_coding Mus_musculus 0.0000004 62
ENSMUST00000095078 Lrrc8a-001 protein_coding Mus_musculus 0 1487
ENSMUST00000113654 Lrrc8a-002 protein_coding Mus_musculus 0 1487
ENSMUST00000120847 Lrrc8d-002 protein_coding Mus_musculus 0.0000004 62
ENSMUST00000127686 Lrrc8d-006 protein_coding Mus_musculus 0.00000005 62
ENSMUST00000139454 Gm28035-001 nonsense_mediated_decay Mus_musculus 0 1487
ENSMUST00000154807 Lrrc8d-007 protein_coding Mus_musculus 0.00000006 62
ENSMUST00000156630 Lrrc8d-005 protein_coding Mus_musculus 0.00000004 62
ENST00000259324 LRRC8A-201 protein_coding Homo_sapiens 0 1648
ENST00000372599 LRRC8A-002 protein_coding Homo_sapiens 0 1648
ENST00000372600 LRRC8A-001 protein_coding Homo_sapiens 0 1648

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