C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB GTPase activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061179 Rabgap1-201 ENSMUSG00000035437 10090 + 2:37443285-37566437 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061179
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061179 5.816±1.83 2.740±0.50 4.380±0.51 10.244±3.79 3.484±0.69 3.368±0.64 3.119±0.64 4.712±0.74 1.921±0.38 5.568±0.78 1.847±0.51 4.460±0.99 4.084±0.94 4.949±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WQ CIL_0006WQ_0002 CGP 2:37432168-37566454

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005097 IEA Rab GTPase activator activity
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0005856 IEA cytoskeleton
GO:0007049 IEA cell cycle
GO:0017137 IEA Rab GTPase binding
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0033124 IEA regulation of GTP catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000088460 RABGAP1L-201 protein_coding Danio_rerio 0 520
ENSDART00000145769 RABGAP1L-001 protein_coding Danio_rerio 0 497
ENST00000317419 RABGAP1-002 retained_intron Homo_sapiens 0 1092
ENST00000373647 RABGAP1-001 protein_coding Homo_sapiens 0 4468
ENST00000402311 RABGAP1-006 protein_coding Homo_sapiens 0 499
ENST00000426918 RABGAP1-003 nonsense_mediated_decay Homo_sapiens 0 1114
ENST00000456584 RABGAP1-005 nonsense_mediated_decay Homo_sapiens 0 2338
ENST00000459903 RABGAP1-007 processed_transcript Homo_sapiens 0 603
ENST00000474707 RABGAP1-012 retained_intron Homo_sapiens 0 614
ENST00000475607 RABGAP1-011 processed_transcript Homo_sapiens 0 333
ENST00000480054 RABGAP1-004 retained_intron Homo_sapiens 0 267
ENST00000485090 RABGAP1-008 retained_intron Homo_sapiens 0 248
ENST00000493854 RABGAP1-009 processed_transcript Homo_sapiens 0 479

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