C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061242 Arf1-001 ENSMUSG00000048076 10090 - 11:59211414-59228270 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061242
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061242 212.230±8.71 344.343±26.91 268.658±14.37 237.373±51.56 217.117±59.25 386.771±69.53 90.494±45.30 162.007±82.25 186.761±44.13 267.955±50.57 101.518±1.82 373.829±108.09 282.076±84.37 99.822±39.31

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002090 ISS regulation of receptor internalization
GO:0005515 IPI protein binding
GO:0005525 TAS GTP binding
GO:0005794 IDA Golgi apparatus
GO:0005829 IDA cytosol
GO:0007264 IEA small GTPase mediated signal transduction
GO:0012505 IDA endomembrane system
GO:0015031 TAS protein transport
GO:0016192 IDA vesicle-mediated transport
GO:0030017 IDA sarcomere
GO:0030054 IEA cell junction
GO:0034315 ISS regulation of Arp2/3 complex-mediated actin nucleation
GO:0043005 IEA neuron projection
GO:0045211 IEA postsynaptic membrane
GO:0060292 ISS long term synaptic depression
GO:0097061 ISS dendritic spine organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000256682 ARF3-001 protein_coding Homo_sapiens 0 494
ENST00000272102 ARF1-001 protein_coding Homo_sapiens 0 1400
ENST00000298316 ARF6-001 protein_coding Homo_sapiens 0 193
ENST00000392493 ARF1P2-001 processed_pseudogene Homo_sapiens 0 573
ENST00000447318 ARF3-005 protein_coding Homo_sapiens 0 254
ENST00000469235 ARF1-010 processed_transcript Homo_sapiens 0 701
ENST00000470558 ARF1-006 processed_transcript Homo_sapiens 0 996
ENST00000470670 ARF1-003 processed_transcript Homo_sapiens 0 573
ENST00000473546 ARF1-013 processed_transcript Homo_sapiens 2e-40 169
ENST00000473949 ARF1-005 processed_transcript Homo_sapiens 0 612
ENST00000477451 ARF1-008 processed_transcript Homo_sapiens 0 477
ENST00000478336 ARF1-007 processed_transcript Homo_sapiens 0 900
ENST00000478424 ARF1-004 processed_transcript Homo_sapiens 0 1157
ENST00000482962 ARF1-009 processed_transcript Homo_sapiens 0 616
ENST00000490705 ARF1-012 processed_transcript Homo_sapiens 0 375
ENST00000497165 ARF1-011 processed_transcript Homo_sapiens 0 697
ENST00000537495 AC073610.5-001 protein_coding Homo_sapiens 4e-38 161
ENST00000540651 ARF1-201 protein_coding Homo_sapiens 0 1288
ENST00000541182 ARF1-202 protein_coding Homo_sapiens 0 1288
ENST00000541959 ARF3-012 protein_coding Homo_sapiens 0 494

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