C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paraneoplastic antigen MA1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061425 Pnma1-001 ENSMUSG00000054383 10090 - 12:84146131-84148489 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverPlacentaTestisENSMUST00000061425
Transcript ID Breast Colon Kidney Liver Placenta Testis
ENSMUST00000061425 0.869±0.00 0.213±0.00 1.406±0.03 0.143±0.06 0.773±0.13 12.052±3.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089E CIL_00089E_0002 VISTA 12:83875691-84476743
CIL_00049K CIL_00049K_0002 CGP 12:84100654-84147498
CIL_0004A0 CIL_0004A0_0002 CGP 12:84114366-84148489
CIL_0001TU CIL_0001TU_0002 CGP 12:84146131-84218881

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002437 ISS inflammatory response to antigenic stimulus
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005730 ISS nucleolus
GO:0005737 ISS cytoplasm
GO:0005925 IEA focal adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316836 PNMA1-001 protein_coding Homo_sapiens 0 1230

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