C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061826 B3galnt1-201 ENSMUSG00000043300 10090 - 3:69574186-69598861 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061826
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061826 11.051±1.89 6.501±2.33 6.397±0.50 10.667±2.53 8.259±0.44 3.314±0.35 1.116±0.28 16.161±1.87 0.760±0.44 3.576±1.12 0.680±0.13 16.786±6.66 3.714±2.26 5.834±1.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Z8 CIL_0001Z8_0002 CGP 3:69316861-69598861
CIL_0001Z9 CIL_0001Z9_0002 CGP 3:69574186-69749042

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus
GO:0006486 IEA protein glycosylation
GO:0008499 IDA UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity
GO:0009312 IDA oligosaccharide biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0047273 IEA galactosylgalactosylglucosylceramide beta-D-acetylgalactosaminyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320474 B3GALNT1-002 protein_coding Homo_sapiens 0 1223
ENST00000392779 B3GALNT1-001 protein_coding Homo_sapiens 0 1223
ENST00000392781 B3GALNT1-003 protein_coding Homo_sapiens 0 1223
ENST00000417187 B3GALNT1-006 protein_coding Homo_sapiens 1e-36 158
ENST00000443050 RP11-345I18.4-001 processed_pseudogene Homo_sapiens 0 436
ENST00000468268 B3GALNT1-013 protein_coding Homo_sapiens 0 425
ENST00000473142 B3GALNT1-015 protein_coding Homo_sapiens 0 241
ENST00000473285 B3GALNT1-005 protein_coding Homo_sapiens 0 1223
ENST00000488170 B3GALNT1-004 protein_coding Homo_sapiens 0 1223
ENST00000492353 B3GALNT1-016 protein_coding Homo_sapiens 0 272

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