C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062304 Lrrc4-001 ENSMUSG00000049939 10090 - 6:28828133-28831747 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062304
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062304 0.815±0.08 3.283±0.33 0.990±0.17 12.509±4.52 0.803±0.29 0.288±0.05 0.287±0.09 0.294±0.07 0.103±0.04 0.549±0.08 0.109±0.04 3.985±1.19 0.893±0.80 1.045±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LN CIL_0008LN_0002 VISTA 6:28095025-28698247
CIL_0001OG CIL_0001OG_0002 CGP 6:28442334-28935162
CIL_0004Y2 CIL_0004Y2_0003 CGP 6:28475139-28935162
CIL_0004Y6 CIL_0004Y6_0003 CGP 6:28661831-29073877

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0043197 IDA dendritic spine
GO:0044309 IDA neuron spine
GO:0045202 IDA synapse
GO:0045211 IDA postsynaptic membrane
GO:0050807 IMP regulation of synapse organization
GO:0050808 IDA synapse organization
GO:0060076 IDA excitatory synapse
GO:0097119 IDA postsynaptic density protein 95 clustering

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000007520 lrrc4.2-001 protein_coding Danio_rerio 1e-22 113
ENST00000249363 LRRC4-001 protein_coding Homo_sapiens 0 4013
ENST00000476782 LRRC4-002 protein_coding Homo_sapiens 0 593
ENST00000478726 LRRC4-003 protein_coding Homo_sapiens 0 405
ENST00000494115 LRRC4-004 protein_coding Homo_sapiens 0 641

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