C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polycomb group ring finger 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062389 Pcgf5-201 ENSMUSG00000024805 10090 + 19:36409748-36456192 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062389
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062389 3.653±0.49 2.047±1.09 6.585±0.52 2.038±1.26 4.061±0.79 3.224±1.05 13.865±1.54 3.833±1.20 3.451±2.76 3.949±1.75 4.507±0.50 2.610±0.88 32.828±10.65 14.164±6.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BY CIL_0008BY_0002 VISTA 19:35829039-36429586
CIL_0001IQ CIL_0001IQ_0002 CGP 19:36111965-36456192
CIL_00018O CIL_00018O_0002 CGP 19:36379067-36621135

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005813 IEA centrosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0031519 ISS PcG protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336126 PCGF5-001 protein_coding Homo_sapiens 0 902
ENST00000490164 PCGF5-002 processed_transcript Homo_sapiens 0 189
ENST00000496708 PCGF5-003 processed_transcript Homo_sapiens 0 220
ENST00000543648 PCGF5-201 protein_coding Homo_sapiens 0 896
ENST00000614189 PCGF5-202 protein_coding Homo_sapiens 0 896

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