C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 53
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062824 Tmem53-001 ENSMUSG00000048772 10090 + 4:117251951-117268580 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062824
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062824 11.835±4.81 17.958±5.60 5.818±0.91 1.893±0.68 6.646±1.59 4.237±0.87 13.621±3.12 21.302±3.81 14.756±10.88 3.364±0.75 1.380±0.29 7.025±2.89 2.192±0.92 290.090±135.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0002 VISTA 4:117090982-117692314
CIL_0001PQ CIL_0001PQ_0002 CGP 4:117251951-117497052

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372235 TMEM53-008 protein_coding Homo_sapiens 0 243
ENST00000372237 TMEM53-001 protein_coding Homo_sapiens 0 863
ENST00000372242 TMEM53-007 protein_coding Homo_sapiens 0 527
ENST00000372243 TMEM53-003 protein_coding Homo_sapiens 0 244
ENST00000372244 TMEM53-005 protein_coding Homo_sapiens 3e-29 134
ENST00000420706 TMEM53-009 protein_coding Homo_sapiens 0 220
ENST00000468117 TMEM53-004 processed_transcript Homo_sapiens 5e-29 134
ENST00000476724 TMEM53-002 processed_transcript Homo_sapiens 5e-29 134
ENST00000495630 TMEM53-006 processed_transcript Homo_sapiens 1e-29 134

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