C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 53
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372244 TMEM53-005 ENSG00000126106 9606 - 1:44635238-44674477 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENST00000372244
Transcript ID Colon
ENST00000372244 1.494±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0001 VISTA 1:44224152-44825477

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000154974 Rnf220-005 processed_transcript Mus_musculus 0 300
ENSMUST00000133971 Rnf220-004 processed_transcript Mus_musculus 0 206
ENSMUST00000128122 Rnf220-009 protein_coding Mus_musculus 0 206
ENSMUST00000094853 Rnf220-002 protein_coding Mus_musculus 0 206
ENSMUST00000150148 Rnf220-008 processed_transcript Mus_musculus 9e-35 152
ENSMUST00000062824 Tmem53-001 protein_coding Mus_musculus 3e-29 134
ENSMUST00000106434 Tmem53-002 protein_coding Mus_musculus 1e-23 115
ENSMUST00000154449 Tmem53-006 processed_transcript Mus_musculus 2e-22 111
ENSMUST00000125943 Tmem53-005 protein_coding Mus_musculus 2e-22 111
ENSMUST00000151829 Rnf220-010 processed_transcript Mus_musculus 1e-18 99
ENSMUST00000102690 Rnf220-006 protein_coding Mus_musculus 1e-18 99
ENSMUST00000030439 Rnf220-001 protein_coding Mus_musculus 1e-18 99

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