C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 6195
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000063059 Gm6195-001 ENSMUSG00000046334 10090 - 1:9802197-9802553 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLiverLungOvaryENSMUST00000063059
Transcript ID Bladder Brain Breast Heart Liver Lung Ovary
ENSMUST00000063059 0.083±0.00 0.195±0.11 0.531±0.00 0.648±0.08 0.341±0.06 0.279±0.00 0.255±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BG CIL_0003BG_0002 CGP 1:9718622-9900845
CIL_0003BJ CIL_0003BJ_0002 CGP 1:9798107-9942085

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000223129 RPA3-001 protein_coding Homo_sapiens 0 291
ENST00000313760 AC010894.4-001 processed_pseudogene Homo_sapiens 0 250
ENST00000396682 RPA3-003 protein_coding Homo_sapiens 0 291
ENST00000401447 RPA3-006 protein_coding Homo_sapiens 0 243
ENST00000402839 RP11-96J19.1-001 processed_pseudogene Homo_sapiens 0 248
ENST00000406109 RPA3-004 protein_coding Homo_sapiens 0 250
ENST00000462723 RPA3-007 retained_intron Homo_sapiens 3e-38 163
ENST00000463632 RPA3-008 retained_intron Homo_sapiens 4e-26 122

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