C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: replication protein A3, 14kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406109 RPA3-004 ENSG00000106399 9606 - 7:7636927-7640816 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonHeartKidneyMusclePlacentaENST00000406109
Transcript ID Adipose Adrenal Colon Heart Kidney Muscle Placenta
ENST00000406109 9.033±0.00 16.852±0.00 8.366±0.00 7.819±0.00 14.577±0.00 8.155±0.00 11.310±1.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002V4 CIL_0002V4_0001 CGP 7:7566872-7718607
CIL_0002V7 CIL_0002V7_0001 CGP 7:7636518-8004059

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006260 IEA DNA replication
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000012627 Rpa3-001 protein_coding Mus_musculus 0 283
ENSMUST00000063059 Gm6195-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000121689 Gm14766-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000159594 Rpa3-002 retained_intron Mus_musculus 2e-26 122

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