C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003BG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000175073-ENSG00000270024 CGP 9606 8:66628487-66860472
GeneTranscriptPositionBiotype
ENSG00000104205 (SGK3)
serum/glucocorticoid regulated kinase family, member 3 		ENST00000345714 (SGK3-013) 66793614-66862022 protein_coding
ENST00000396596 (SGK3-201) 66775181-66862020 protein_coding
ENST00000494528 (SGK3-011) 66712777-66737666 processed_transcript
ENST00000518388 (SGK3-007) 66775566-66822427 protein_coding
ENST00000519396 (SGK3-016) 66804375-66836066 protein_coding
ENST00000520976 (SGK3-004) 66775227-66860455 protein_coding
ENST00000521152 (SGK3-015) 66804379-66840070 protein_coding
ENST00000521198 (SGK3-005) 66712418-66860859 protein_coding
ENST00000521435 (SGK3-009) 66839801-66843514 processed_transcript
ENST00000521960 (SGK3-006) 66775214-66831313 protein_coding
ENST00000522398 (SGK3-003) 66775218-66860840 protein_coding
ENST00000522629 (SGK3-014) 66775224-66835794 protein_coding
ENST00000523260 (SGK3-010) 66840680-66847255 processed_transcript
ENST00000523401 (SGK3-008) 66712734-66804447 processed_transcript
ENSG00000175073 (VCPIP1)
valosin containing protein (p97)/p47 complex interacting protein 1 		ENST00000310421 (VCPIP1-001) 66628487-66667217 protein_coding
ENSG00000201365 (Y_RNA)
Y RNA 		ENST00000364495 (Y_RNA.1-448) 66653469-66653576 misc_RNA
ENSG00000213005 (PTTG3P)
pituitary tumor-transforming 3, pseudogene 		ENST00000521862 (PTTG3P-001) 66767400-66768005 processed_pseudogene
ENSG00000213865 (C8orf44)
chromosome 8 open reading frame 44 		ENST00000390159 (C8orf44-001) 66676219-66681000 protein_coding
ENST00000518860 (C8orf44-004) 66679539-66685560 processed_transcript
ENST00000519561 (C8orf44-002) 66667618-66681158 protein_coding
ENST00000521113 (C8orf44-003) 66667615-66685564 processed_transcript
ENST00000521889 (C8orf44-005) 66667652-66678295 protein_coding
ENSG00000270024 (C8orf44-SGK3)
C8orf44-SGK3 readthrough 		ENST00000519289 (C8orf44-SGK3-001) 66667616-66860472 protein_coding
ENST00000520044 (C8orf44-SGK3-002) 66667596-66793833 processed_transcript
ENSG00000278888 (AC090154.1)
 ENST00000623055 (AC090154.1-201) 66674499-66675916 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0003BG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045210-ENSMUSG00000025915 CGP 10090 1:9718622-9900845
GeneTranscriptPositionBiotype
ENSMUSG00000025915 (Sgk3)
serum/glucocorticoid regulated kinase 3 		ENSMUST00000097826 (Sgk3-009) 9848397-9899853 protein_coding
ENSMUST00000166384 (Sgk3-004) 9798107-9900843 protein_coding
ENSMUST00000168907 (Sgk3-001) 9798143-9900845 protein_coding
ENSMUST00000171265 (Sgk3-008) 9848272-9900843 protein_coding
ENSMUST00000188298 (Sgk3-007) 9798208-9900008 nonsense_mediated_decay
ENSMUST00000188486 (Sgk3-012) 9895427-9899174 retained_intron
ENSMUST00000188625 (Sgk3-005) 9798158-9830338 retained_intron
ENSMUST00000188738 (Sgk3-006) 9798185-9899618 nonsense_mediated_decay
ENSMUST00000188782 (Sgk3-002) 9798143-9900770 nonsense_mediated_decay
ENSMUST00000188830 (Sgk3-014) 9848321-9865631 processed_transcript
ENSMUST00000189050 (Sgk3-013) 9848321-9872554 retained_intron
ENSMUST00000191338 (Sgk3-010) 9883467-9889077 retained_intron
ENSMUSG00000045210 (Vcpip1)
valosin containing protein (p97)/p47 complex interacting protein 1 		ENSMUST00000057438 (Vcpip1-001) 9718622-9748382 protein_coding
ENSMUSG00000046334 (Gm6195)
predicted pseudogene 6195 		ENSMUST00000063059 (Gm6195-001) 9802197-9802553 processed_pseudogene
ENSMUSG00000088916 (Gm22607)
predicted gene, 22607 		ENSMUST00000158291 (Gm22607-201) 9834498-9834602 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003BG_0001ENSG00000104205ENST00000345714ENST00000396596ENST00000494528ENST00000518388ENST00000519396ENST00000520976ENST00000521152ENST00000521198ENST00000521435ENST00000521960ENST00000522398ENST00000522629ENST00000523260ENST00000523401ENSG00000175073ENST00000310421ENSG00000201365ENST00000364495ENSG00000213005ENST00000521862ENSG00000213865ENST00000390159ENST00000518860ENST00000519561ENST00000521113ENST00000521889ENSG00000270024ENST00000519289ENST00000520044ENSG00000278888ENST00000623055CIL_0003BG_0002ENSMUSG00000025915ENSMUST00000097826ENSMUST00000166384ENSMUST00000168907ENSMUST00000171265ENSMUST00000188298ENSMUST00000188486ENSMUST00000188625ENSMUST00000188738ENSMUST00000188782ENSMUST00000188830ENSMUST00000189050ENSMUST00000191338ENSMUSG00000045210ENSMUST00000057438ENSMUSG00000046334ENSMUST00000063059ENSMUSG00000088916ENSMUST00000158291
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003BG_0001ENSG00000104205ENST00000345714ENST00000396596ENST00000518388ENST00000521198ENST00000522398ENST00000522629ENSG00000175073ENST00000310421ENSG00000201365ENST00000364495ENSG00000213005ENST00000521862ENSG00000213865ENST00000390159ENST00000519561ENST00000521889ENSG00000270024ENST00000519289ENSG00000278888ENST00000623055CIL_0003BG_0002ENSMUSG00000025915ENSMUST00000097826ENSMUST00000166384ENSMUST00000168907ENSMUST00000171265ENSMUST00000188298ENSMUST00000188486ENSMUST00000188625ENSMUST00000188738ENSMUST00000188782ENSMUST00000188830ENSMUST00000191338ENSMUSG00000045210ENSMUST00000057438ENSMUSG00000046334ENSMUST00000063059ENSMUSG00000088916ENSMUST00000158291
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104205 ENST00000345714 0.996±0.00 1.218±0.00 1.315±0.00 1.891±0.00 1.017±0.00 0.847±0.00 0.923±0.00 0.843±0.00 0.506±0.00 1.378±0.87 N/A 0.324±0.00 0.760±0.41 N/A
ENST00000396596 N/A N/A N/A 4.535±0.00 N/A N/A N/A 2.168±0.37 N/A N/A N/A 1.418±0.38 N/A 1.936±0.00
ENST00000494528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.148±0.83 N/A 13.132±0.00
ENST00000519396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521198 N/A N/A N/A N/A 0.567±0.00 N/A N/A N/A 1.128±0.00 N/A N/A N/A 0.799±0.00 3.390±0.00
ENST00000521435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.108±0.00 N/A
ENST00000522629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.007±0.00 N/A
ENST00000523260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000175073 ENST00000310421 3.422±0.00 3.029±0.00 1.627±0.00 4.589±0.26 3.087±0.23 3.018±1.28 1.911±0.13 3.202±0.38 3.062±1.75 3.934±2.35 2.324±0.84 2.053±0.97 1.276±0.63 5.336±1.27
ENSG00000201365 ENST00000364495 0.165±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213005 ENST00000521862 N/A 0.023±0.00 N/A N/A 0.234±0.00 N/A N/A 0.183±0.00 N/A 0.741±0.00 N/A N/A N/A N/A
ENSG00000213865 ENST00000390159 N/A N/A 2.467±0.00 N/A N/A N/A 0.262±0.00 N/A N/A N/A 0.277±0.00 N/A N/A N/A
ENST00000518860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519561 N/A N/A N/A 1.558±0.00 N/A N/A N/A N/A N/A N/A N/A 0.493±0.00 0.366±0.00 N/A
ENST00000521113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.871±0.00 N/A N/A
ENSG00000270024 ENST00000519289 N/A N/A N/A N/A 0.998±0.00 N/A 0.255±0.00 N/A 0.484±0.00 1.619±0.00 N/A 0.363±0.00 N/A N/A
ENST00000520044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000278888 ENST00000623055 N/A N/A N/A N/A 0.305±0.00 0.140±0.00 0.134±0.00 0.302±0.00 0.128±0.00 N/A 0.128±0.00 2.249±2.28 N/A 0.370±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025915 ENSMUST00000097826 0.431±0.00 N/A 1.415±0.40 0.686±0.11 1.200±0.44 N/A 1.649±0.13 1.582±0.00 6.355±4.22 1.271±0.31 0.692±0.29 1.256±0.69 8.982±4.53 1.894±0.75
ENSMUST00000166384 0.719±0.23 N/A 1.089±0.13 0.473±0.11 0.607±0.00 0.406±0.19 0.900±0.22 1.076±0.44 4.553±3.63 1.257±0.13 0.399±0.07 0.448±0.00 3.209±1.26 1.036±0.37
ENSMUST00000168907 1.976±0.95 1.229±0.31 1.958±0.20 0.393±0.16 1.975±0.75 0.384±0.24 1.193±0.07 2.587±1.14 4.862±2.26 2.779±1.21 0.741±0.18 1.173±0.58 5.880±2.85 1.507±0.37
ENSMUST00000171265 0.643±0.00 N/A 1.112±0.34 1.070±0.00 1.336±0.04 N/A 0.673±0.00 1.195±0.36 1.811±0.00 0.910±0.00 N/A 0.985±1.03 8.049±0.03 1.241±0.30
ENSMUST00000188298 N/A N/A N/A N/A N/A N/A N/A N/A 0.404±0.00 N/A 0.369±0.00 N/A N/A N/A
ENSMUST00000188486 N/A 0.292±0.14 N/A 0.270±0.00 0.533±0.16 0.100±0.02 N/A N/A N/A N/A N/A 0.374±0.14 N/A 0.454±0.00
ENSMUST00000188625 N/A N/A N/A N/A N/A 0.121±0.00 N/A N/A N/A N/A N/A 0.271±0.00 N/A N/A
ENSMUST00000188738 N/A N/A N/A 0.281±0.00 1.214±0.00 0.207±0.05 N/A N/A 0.306±0.00 N/A N/A 0.434±0.01 N/A N/A
ENSMUST00000188782 N/A N/A N/A N/A N/A 0.204±0.00 N/A N/A 0.529±0.00 N/A N/A 1.538±0.58 0.960±0.00 N/A
ENSMUST00000188830 N/A N/A N/A 6.872±0.00 N/A 0.799±0.00 N/A N/A N/A N/A N/A 8.389±0.00 58.470±25.08 16.906±0.00
ENSMUST00000189050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191338 N/A 0.287±0.00 N/A N/A N/A 0.166±0.03 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000045210 ENSMUST00000057438 1.523±0.52 0.584±0.06 2.547±0.74 3.128±1.55 1.018±0.19 0.727±0.15 0.741±0.10 1.220±0.25 1.997±0.86 1.687±0.30 1.289±0.14 1.627±1.57 5.196±0.81 2.752±0.74
ENSMUSG00000046334 ENSMUST00000063059 N/A N/A 0.083±0.00 0.195±0.11 0.531±0.00 N/A 0.648±0.08 N/A 0.341±0.06 0.279±0.00 N/A 0.255±0.00 N/A N/A
ENSMUSG00000088916 ENSMUST00000158291 N/A N/A N/A N/A N/A N/A 3170.670±0.00 N/A N/A N/A N/A N/A N/A N/A

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