C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: replication protein A3, 14kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396682 RPA3-003 ENSG00000106399 9606 - 7:7636932-7640972 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000396682
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000396682 6.307±0.00 14.046±0.00 12.333±0.00 5.603±0.00 5.176±0.00 11.811±1.82 13.353±0.00 9.505±0.00 12.115±2.26 8.134±0.96 22.243±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002V4 CIL_0002V4_0001 CGP 7:7566872-7718607
CIL_0002V7 CIL_0002V7_0001 CGP 7:7636518-8004059

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0000718 TAS nucleotide-excision repair, DNA damage removal
GO:0000722 TAS telomere maintenance via recombination
GO:0000723 TAS telomere maintenance
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0000730 TAS DNA recombinase assembly
GO:0003677 IEA DNA binding
GO:0003684 IDA damaged DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005662 IDA DNA replication factor A complex
GO:0006260 IEA:IMP DNA replication
GO:0006271 TAS DNA strand elongation involved in DNA replication
GO:0006281 IEA:TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006284 IDA base-excision repair
GO:0006289 IMP nucleotide-excision repair
GO:0006297 TAS nucleotide-excision repair, DNA gap filling
GO:0006298 IMP mismatch repair
GO:0006302 TAS double-strand break repair
GO:0006310 IEA DNA recombination
GO:0032201 TAS telomere maintenance via semi-conservative replication

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000012627 Rpa3-001 protein_coding Mus_musculus 0 339
ENSMUST00000063059 Gm6195-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000121689 Gm14766-001 processed_pseudogene Mus_musculus 0 215
ENSMUST00000159594 Rpa3-002 retained_intron Mus_musculus 8.99634e-43 178

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