C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000063417 Srsf7-201 ENSMUSG00000024097 10090 - 17:80200089-80207305 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000063417
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000063417 6.063±2.48 5.658±3.30 15.917±0.00 57.482±37.44 4.461±1.07 5.784±1.73 4.068±1.74 4.753±1.38 14.081±13.30 4.180±1.10 2.661±0.64 10.828±6.01 18.018±9.86 17.601±6.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00067R CIL_00067R_0002 CGP 17:80127471-80207305

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome
GO:0051028 IEA mRNA transport
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313117 SRSF7-001 protein_coding Homo_sapiens 0 1443
ENST00000409276 SRSF7-012 protein_coding Homo_sapiens 0 1323
ENST00000415527 SRSF7-004 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000425778 SRSF7-002 nonsense_mediated_decay Homo_sapiens 0 891
ENST00000425941 SRSF7-010 nonsense_mediated_decay Homo_sapiens 0 843
ENST00000431066 SRSF7-011 nonsense_mediated_decay Homo_sapiens 0 767
ENST00000432873 SRSF7-008 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000443213 SRSF7-003 nonsense_mediated_decay Homo_sapiens 0 776
ENST00000446327 SRSF7-201 protein_coding Homo_sapiens 0 900
ENST00000452806 SRSF7-007 protein_coding Homo_sapiens 0 457
ENST00000477635 SRSF7-005 retained_intron Homo_sapiens 0 545
ENST00000487773 SRSF7-009 retained_intron Homo_sapiens 0 394

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