C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoic acid receptor, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000063750 Rarb-201 ENSMUSG00000017491 10090 - 14:16430842-16575472 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000063750
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000063750 1.743±0.18 2.704±0.67 5.086±0.71 2.936±0.49 1.174±0.33 0.787±0.34 4.618±0.55 3.879±0.33 1.447±0.63 2.174±0.31 2.526±0.43 0.640±0.26 0.605±0.27 0.273±0.21

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001657 IMP ureteric bud development
GO:0002068 IGI glandular epithelial cell development
GO:0003148 IGI outflow tract septum morphogenesis
GO:0003406 IGI retinal pigment epithelium development
GO:0003417 IGI growth plate cartilage development
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003708 IEA retinoic acid receptor activity
GO:0005515 IEA protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0008144 IEA drug binding
GO:0008270 IEA zinc ion binding
GO:0008284 IGI positive regulation of cell proliferation
GO:0008285 IGI negative regulation of cell proliferation
GO:0021756 IMP striatum development
GO:0022008 IMP neurogenesis
GO:0031641 IEA regulation of myelination
GO:0032331 IMP negative regulation of chondrocyte differentiation
GO:0032403 IEA protein complex binding
GO:0035116 IGI embryonic hindlimb morphogenesis
GO:0035264 IGI multicellular organism growth
GO:0043065 IGI positive regulation of apoptotic process
GO:0043066 IGI negative regulation of apoptotic process
GO:0043068 IGI positive regulation of programmed cell death
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA sequence-specific DNA binding
GO:0045666 IEA positive regulation of neuron differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046965 IEA retinoid X receptor binding
GO:0048048 IGI embryonic eye morphogenesis
GO:0048384 IEA retinoic acid receptor signaling pathway
GO:0048566 IEA embryonic digestive tract development
GO:0055012 IMP ventricular cardiac muscle cell differentiation
GO:0060041 IGI retina development in camera-type eye
GO:0060348 IGI bone development
GO:0061037 IMP negative regulation of cartilage development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254066 RARA-001 protein_coding Homo_sapiens 0 684
ENST00000330688 RARB-001 protein_coding Homo_sapiens 0 2946
ENST00000383772 RARB-005 protein_coding Homo_sapiens 0 1393
ENST00000394081 RARA-004 protein_coding Homo_sapiens 0 686
ENST00000394086 RARA-003 protein_coding Homo_sapiens 0 684
ENST00000394089 RARA-002 protein_coding Homo_sapiens 0 684
ENST00000437042 RARB-002 protein_coding Homo_sapiens 0 2337
ENST00000458646 RARB-004 protein_coding Homo_sapiens 0 2337
ENST00000462272 RARB-008 processed_transcript Homo_sapiens 0 987
ENST00000475125 RARA-005 protein_coding Homo_sapiens 0 529
ENST00000479097 RARB-009 processed_transcript Homo_sapiens 0 1077
ENST00000480001 RARB-007 processed_transcript Homo_sapiens 0 989
ENST00000489694 RARB-006 processed_transcript Homo_sapiens 0 385
ENST00000617726 RARA-201 protein_coding Homo_sapiens 0 671

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