C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoic acid receptor, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475125 RARA-005 ENSG00000131759 9606 + 17:40345241-40354409 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLungOvaryPlacentaTestisENST00000475125
Transcript ID Bladder Brain Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000475125 1.614±0.00 0.791±0.00 0.666±0.00 0.322±0.00 1.543±0.00 3.458±0.00 40.718±0.00 21.712±0.00 26.397±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0001 VISTA 17:39768583-40372873
CIL_0002GL CIL_0002GL_0001 CGP 17:40287633-40357643
CIL_00050G CIL_00050G_0001 CGP 17:40309192-40363815

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164748 Rara-201 protein_coding Mus_musculus 0 1090
ENSMUST00000107473 Rara-004 protein_coding Mus_musculus 0 1090
ENSMUST00000068133 Rara-001 protein_coding Mus_musculus 0 1090
ENSMUST00000107475 Rara-002 protein_coding Mus_musculus 0 1090
ENSMUST00000107474 Rara-003 protein_coding Mus_musculus 0 1090
ENSDART00000126022 rarab-201 protein_coding Danio_rerio 0 582
ENSDART00000044677 rarab-001 protein_coding Danio_rerio 0 582
ENSMUST00000063750 Rarb-201 protein_coding Mus_musculus 0 529

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