C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein phosphatase 4, regulatory subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000063854 Ppp4r2-201 ENSMUSG00000052144 10090 + 6:100833638-100868717 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000063854
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000063854 3.310±1.08 3.579±0.67 7.236±0.94 8.365±4.03 3.046±1.64 1.700±1.51 1.951±0.30 1.699±0.37 6.008±4.35 2.466±0.69 8.121±0.68 7.290±2.59 16.018±2.36 6.208±2.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00059V CIL_00059V_0003 CGP 6:100704734-100868717
CIL_0005JR CIL_0005JR_0003 CGP 6:100833638-101377897

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0010569 ISS regulation of double-strand break repair via homologous recombination
GO:0030289 ISS protein phosphatase 4 complex
GO:0030362 ISS protein phosphatase type 4 regulator activity
GO:0030674 IEA protein binding, bridging
GO:0050790 IEA regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000124168 ppp4r2b-201 protein_coding Danio_rerio 0 224
ENSDART00000075486 ppp4r2b-001 protein_coding Danio_rerio 0 224
ENST00000356692 PPP4R2-001 protein_coding Homo_sapiens 0 2985
ENST00000411669 AC024937.4-001 processed_pseudogene Homo_sapiens 0 1077
ENST00000429866 AC024937.6-001 processed_pseudogene Homo_sapiens 0 1066
ENST00000460360 PPP4R2-006 protein_coding Homo_sapiens 0 361
ENST00000470976 PPP4R2-004 retained_intron Homo_sapiens 0 806
ENST00000476505 PPP4R2-002 protein_coding Homo_sapiens 0 446
ENST00000482242 PPP4R2-003 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000488810 PPP4R2-005 protein_coding Homo_sapiens 0 771
ENST00000495566 PPP4R2-007 protein_coding Homo_sapiens 0 206
ENST00000504656 CTD-2083E4.5-001 processed_pseudogene Homo_sapiens 0 981
ENST00000507981 RP11-496H1.1-001 processed_pseudogene Homo_sapiens 0 950
ENST00000512270 CTD-2012J19.1-001 processed_pseudogene Homo_sapiens 0 723
ENST00000603917 RP11-141C7.3-001 processed_pseudogene Homo_sapiens 0 845

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