C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein phosphatase 4, regulatory subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356692 PPP4R2-001 ENSG00000163605 9606 + 3:72996785-73069199 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356692
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356692 7.485±0.00 6.890±0.00 7.084±1.49 6.334±1.27 5.740±0.58 6.094±2.85 7.618±0.61 5.144±1.88 6.162±0.99 4.207±2.97 7.479±0.55 4.770±1.39 12.025±0.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00059P CIL_00059P_0002 CGP 3:72749277-72998138
CIL_00059V CIL_00059V_0002 CGP 3:72888073-73069199

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005813 TAS centrosome
GO:0006397 IEA mRNA processing
GO:0006464 TAS cellular protein modification process
GO:0008380 IEA RNA splicing
GO:0010569 IMP regulation of double-strand break repair via homologous recombination
GO:0030289 IDA protein phosphatase 4 complex
GO:0030362 IMP protein phosphatase type 4 regulator activity
GO:0030674 IMP protein binding, bridging
GO:0050790 IMP regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000063854 Ppp4r2-201 protein_coding Mus_musculus 0 2985
ENSMUST00000121667 Gm6039-001 processed_pseudogene Mus_musculus 0 1260
ENSMUST00000178019 Gm20784-201 processed_pseudogene Mus_musculus 0 1166
ENSMUST00000178830 Gm21378-201 processed_pseudogene Mus_musculus 0 1166

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