C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005JR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000026540-ENSDARG00000073757 CGP 7955 23:10911416-11020503
GeneTranscriptPositionBiotype
ENSDARG00000026540 (ppp4r2a)
protein phosphatase 4, regulatory subunit 2a 		ENSDART00000035693 (ppp4r2a-001) 10911416-10933647 protein_coding
ENSDART00000132421 (ppp4r2a-002) 10920258-10920725 retained_intron
ENSDARG00000073757 (pdzrn3a)
PDZ domain containing RING finger 3a 		ENSDART00000112965 (pdzrn3a-201) 10934944-11020503 protein_coding
ENSDART00000142533 (pdzrn3a-001) 10937786-10938223 protein_coding
CIL_0005JR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000053447-ENSDARG00000073869 CGP 7955 6:44128648-44333451
GeneTranscriptPositionBiotype
ENSDARG00000053447 (ppp4r2b)
protein phosphatase 4, regulatory subunit 2b 		ENSDART00000075486 (ppp4r2b-001) 44128648-44138971 protein_coding
ENSDART00000124168 (ppp4r2b-201) 44128652-44138967 protein_coding
ENSDARG00000073869 (pdzrn3b)
PDZ domain containing RING finger 3b 		ENSDART00000114330 (pdzrn3b-001) 44175683-44333451 protein_coding
ENSDART00000157215 (pdzrn3b-002) 44186021-44211514 processed_transcript
ENSDARG00000097338 (si:ch211-2e18.1)
si:ch211-2e18.1 		ENSDART00000153529 (si:ch211-2e18.1-001) 44332047-44344383 antisense
CIL_0005JR_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000052144-ENSMUSG00000035357 CGP 10090 6:100833638-101377897
GeneTranscriptPositionBiotype
ENSMUSG00000035357 (Pdzrn3)
PDZ domain containing RING finger 3 		ENSMUST00000075994 (Pdzrn3-001) 101149609-101377897 protein_coding
ENSMUST00000124884 (Pdzrn3-004) 101156973-101355010 processed_transcript
ENSMUST00000144505 (Pdzrn3-002) 101169856-101199200 retained_intron
ENSMUST00000151175 (Pdzrn3-003) 101179878-101377342 protein_coding
ENSMUSG00000052144 (Ppp4r2)
protein phosphatase 4, regulatory subunit 2 		ENSMUST00000063854 (Ppp4r2-201) 100833638-100868717 protein_coding
ENSMUSG00000097834 (Gm26911)
predicted gene, 26911 		ENSMUST00000181770 (Gm26911-201) 101198569-101210269 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005JR_0001ENSDARG00000026540ENSDART00000035693ENSDART00000132421ENSDARG00000073757ENSDART00000112965ENSDART00000142533CIL_0005JR_0002ENSDARG00000053447ENSDART00000075486ENSDART00000124168ENSDARG00000073869ENSDART00000114330ENSDART00000157215ENSDARG00000097338ENSDART00000153529CIL_0005JR_0003ENSMUSG00000035357ENSMUST00000075994ENSMUST00000124884ENSMUST00000144505ENSMUST00000151175ENSMUSG00000052144ENSMUST00000063854ENSMUSG00000097834ENSMUST00000181770
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005JR_0001ENSDARG00000026540ENSDART00000035693ENSDARG00000073757ENSDART00000112965ENSDART00000142533CIL_0005JR_0002ENSDARG00000053447ENSDART00000075486ENSDART00000124168ENSDARG00000073869ENSDART00000114330ENSDARG00000097338ENSDART00000153529CIL_0005JR_0003ENSMUSG00000035357ENSMUST00000075994ENSMUST00000144505ENSMUSG00000052144ENSMUST00000063854ENSMUSG00000097834ENSMUST00000181770
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000026540 ENSDART00000035693 N/A N/A N/A 6.142±1.23 N/A N/A 4.419±1.04 7.772±1.13 0.922±0.00 N/A 2.408±0.00 N/A N/A N/A
ENSDART00000132421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000073757 ENSDART00000112965 N/A N/A N/A 1.539±1.35 N/A N/A 0.029±0.00 0.065±0.00 N/A N/A 0.216±0.00 N/A N/A N/A
ENSDART00000142533 N/A N/A N/A N/A N/A N/A N/A N/A 0.256±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000053447 ENSDART00000075486 N/A N/A N/A 8.309±1.41 N/A N/A 9.602±0.18 12.298±0.00 1.437±0.00 N/A 4.512±0.00 N/A N/A N/A
ENSDART00000124168 N/A N/A N/A 4.758±0.04 N/A N/A 2.836±1.57 11.076±0.20 0.207±0.00 N/A N/A N/A N/A N/A
ENSDARG00000073869 ENSDART00000114330 N/A N/A N/A 1.163±0.17 N/A N/A 7.489±4.76 1.643±0.00 0.080±0.00 N/A 1.431±0.00 N/A N/A N/A
ENSDART00000157215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000097338 ENSDART00000153529 N/A N/A N/A N/A N/A N/A 15.030±0.00 35.424±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035357 ENSMUST00000075994 14.640±4.12 15.258±2.73 27.506±5.70 8.925±8.85 6.775±2.99 12.675±1.36 4.764±0.56 4.499±0.48 1.064±0.48 8.156±2.11 20.005±4.68 19.060±5.87 3.689±2.10 0.443±0.19
ENSMUST00000124884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.124±0.00
ENSMUST00000151175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000052144 ENSMUST00000063854 3.310±1.08 3.579±0.67 7.236±0.94 8.365±4.03 3.046±1.64 1.700±1.51 1.951±0.30 1.699±0.37 6.008±4.35 2.466±0.69 8.121±0.68 7.290±2.59 16.018±2.36 6.208±2.01
ENSMUSG00000097834 ENSMUST00000181770 0.187±0.15 0.164±0.09 0.193±0.00 0.206±0.08 0.174±0.08 0.086±0.03 0.037±0.03 0.086±0.06 0.020±0.02 0.110±0.03 0.029±0.00 0.147±0.17 0.116±0.07 0.670±0.09

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