C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000064454 Gcn1l1-001 ENSMUSG00000041638 10090 + 5:115565254-115622656 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064454
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064454 10.669±3.96 11.677±1.05 3.803±0.71 11.048±2.33 11.443±4.54 9.509±1.58 6.145±2.03 9.338±1.43 4.612±1.42 13.334±1.84 5.084±0.63 16.198±5.48 9.486±4.81 12.750±1.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZA CIL_0007ZA_0002 VISTA 5:114966986-115567561
CIL_0009CQ CIL_0009CQ_0002 VISTA 5:115188390-115791906
CIL_0004YR CIL_0004YR_0002 CGP 5:115565254-115647736

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300648 GCN1L1-001 protein_coding Homo_sapiens 0 9400
ENST00000547369 GCN1L1-004 retained_intron Homo_sapiens 0 577
ENST00000548132 GCN1L1-006 retained_intron Homo_sapiens 0 316
ENST00000549815 GCN1L1-008 retained_intron Homo_sapiens 0 586
ENST00000550471 GCN1L1-003 retained_intron Homo_sapiens 0 878
ENST00000551920 GCN1L1-005 retained_intron Homo_sapiens 0 479

Loading