C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004YR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000058419-ENSDARG00000058425 CGP 7955 8:3722269-3870138
GeneTranscriptPositionBiotype
ENSDARG00000058419 (gcn1l1)
GCN1 general control of amino-acid synthesis 1-like 1 (yeast) 		ENSDART00000081272 (gcn1l1-201) 3722269-3838596 protein_coding
ENSDARG00000058425 (rab35b)
RAB35, member RAS oncogene family b 		ENSDART00000033152 (rab35b-001) 3844259-3870138 protein_coding
CIL_0004YR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041638-ENSMUSG00000029518 CGP 10090 5:115565254-115647736
GeneTranscriptPositionBiotype
ENSMUSG00000029518 (Rab35)
RAB35, member RAS oncogene family 		ENSMUST00000031492 (Rab35-001) 115631929-115647736 protein_coding
ENSMUST00000138885 (Rab35-002) 115632141-115646119 nonsense_mediated_decay
ENSMUSG00000041638 (Gcn1l1)
GCN1 general control of amino-acid synthesis 1-like 1 (yeast) 		ENSMUST00000064454 (Gcn1l1-001) 115565254-115622656 protein_coding
ENSMUST00000094427 (Gcn1l1-003) 115605696-115622648 protein_coding
ENSMUST00000122964 (Gcn1l1-007) 115609838-115610614 retained_intron
ENSMUST00000125299 (Gcn1l1-006) 115582397-115587418 processed_transcript
ENSMUST00000129424 (Gcn1l1-002) 115565276-115584747 retained_intron
ENSMUST00000136041 (Gcn1l1-004) 115565274-115581280 retained_intron
ENSMUST00000137523 (Gcn1l1-009) 115614872-115616019 retained_intron
ENSMUST00000139933 (Gcn1l1-008) 115611831-115613389 processed_transcript
ENSMUST00000141472 (Gcn1l1-005) 115565272-115584238 retained_intron
ENSMUST00000151030 (Gcn1l1-010) 115582268-115622653 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004YR_0001ENSDARG00000058419ENSDART00000081272ENSDARG00000058425ENSDART00000033152CIL_0004YR_0002ENSMUSG00000029518ENSMUST00000031492ENSMUST00000138885ENSMUSG00000041638ENSMUST00000064454ENSMUST00000094427ENSMUST00000122964ENSMUST00000125299ENSMUST00000129424ENSMUST00000136041ENSMUST00000137523ENSMUST00000139933ENSMUST00000141472ENSMUST00000151030
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004YR_0001ENSDARG00000058419ENSDART00000081272ENSDARG00000058425ENSDART00000033152CIL_0004YR_0002ENSMUSG00000029518ENSMUST00000031492ENSMUST00000138885ENSMUSG00000041638ENSMUST00000064454ENSMUST00000094427ENSMUST00000151030
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000058419 ENSDART00000081272 N/A N/A N/A 6.917±5.92 N/A N/A 15.155±5.51 3.358±0.00 23.840±0.00 N/A 23.655±0.00 N/A N/A N/A
ENSDARG00000058425 ENSDART00000033152 N/A N/A N/A 4.276±2.68 N/A N/A 6.344±1.81 10.915±9.46 3.245±0.00 N/A 6.202±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029518 ENSMUST00000031492 28.339±1.94 34.823±3.85 19.695±2.01 27.981±5.53 35.082±10.75 31.962±19.16 8.473±5.71 23.862±1.57 14.739±6.90 35.517±1.11 7.547±1.64 35.323±9.56 24.892±6.44 3.089±2.07
ENSMUST00000138885 N/A N/A 9.578±0.61 34.485±17.86 N/A 10.996±0.00 8.041±0.00 N/A 11.716±4.47 N/A 3.730±0.00 21.567±14.51 24.303±11.86 8.772±0.00
ENSMUSG00000041638 ENSMUST00000064454 10.669±3.96 11.677±1.05 3.803±0.71 11.048±2.33 11.443±4.54 9.509±1.58 6.145±2.03 9.338±1.43 4.612±1.42 13.334±1.84 5.084±0.63 16.198±5.48 9.486±4.81 12.750±1.82
ENSMUST00000094427 N/A 3.687±0.00 4.067±1.58 7.061±0.00 N/A 3.875±0.21 3.703±0.00 5.160±1.24 3.329±0.93 N/A 2.398±0.50 6.183±2.63 7.011±2.41 N/A
ENSMUST00000122964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151030 N/A 4.580±1.10 N/A 10.327±0.00 3.827±0.73 2.728±0.36 N/A 2.233±0.12 1.450±0.00 2.860±0.00 1.119±0.00 6.914±1.87 7.337±2.02 8.741±0.00

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