C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GS homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065382 Gsx1-001 ENSMUSG00000053129 10090 + 5:147188696-147190947 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryTestisENSMUST00000065382
Transcript ID Brain Liver Ovary Testis
ENSMUST00000065382 2.399±1.65 0.012±0.01 0.029±0.00 0.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CO CIL_0008CO_0002 VISTA 5:146855041-147456530
CIL_00082E CIL_00082E_0002 VISTA 5:146922660-147524221
CIL_0007MT CIL_0007MT_0002 UCNEbase 5:146994099-147547626
CIL_0004CM CIL_0004CM_0002 CGP 5:147077050-147190947
CIL_0003F7 CIL_0003F7_0002 CGP 5:147188696-147278008

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0021527 IGI spinal cord association neuron differentiation
GO:0021854 IMP hypothalamus development
GO:0021984 IMP adenohypophysis development
GO:0043565 IDA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048663 IGI neuron fate commitment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302945 GSX1-001 protein_coding Homo_sapiens 0 957

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