C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GS homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000302945 GSX1-001 ENSG00000169840 9606 + 13:27792643-27794768 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000302945
Transcript ID Brain
ENST00000302945 0.166±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CO CIL_0008CO_0001 VISTA 13:27444442-28045997
CIL_0007MT CIL_0007MT_0001 UCNEbase 13:27505095-28294517
CIL_00082E CIL_00082E_0001 VISTA 13:27521824-28123399
CIL_0004CM CIL_0004CM_0001 CGP 13:27620743-27794768
CIL_0003F7 CIL_0003F7_0001 CGP 13:27792643-27926231

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0021527 IEA spinal cord association neuron differentiation
GO:0021854 IEA hypothalamus development
GO:0021984 IEA adenohypophysis development
GO:0043565 IDA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048663 IEA neuron fate commitment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065382 Gsx1-001 protein_coding Mus_musculus 0 957
ENSMUST00000088311 Gbx1-001 protein_coding Mus_musculus 0.000008 57

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