C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 214
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065398 Nup214-001 ENSMUSG00000001855 10090 + 2:31974436-32052371 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065398
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065398 4.893±2.41 7.841±4.94 1.551±0.01 3.319±0.44 4.728±1.80 4.952±2.69 3.351±0.40 4.547±2.21 2.759±0.70 7.208±2.26 2.233±0.44 12.444±3.72 6.247±4.37 10.086±4.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088E CIL_00088E_0002 VISTA 2:31827730-32428586
CIL_0006IL CIL_0006IL_0002 CGP 2:31950260-32053975
CIL_0002EO CIL_0002EO_0003 CGP 2:31974436-32084857

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005487 IMP nucleocytoplasmic transporter activity
GO:0005634 IEA nucleus
GO:0005643 TAS nuclear pore
GO:0005925 IEA focal adhesion
GO:0006406 IMP mRNA export from nucleus
GO:0006606 IMP protein import into nucleus
GO:0006611 IEA protein export from nucleus
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0051726 IMP regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359428 NUP214-001 protein_coding Homo_sapiens 0 2710
ENST00000411637 NUP214-010 protein_coding Homo_sapiens 0 1707
ENST00000451030 NUP214-201 protein_coding Homo_sapiens 0 1306
ENST00000453861 NUP214-028 nonsense_mediated_decay Homo_sapiens 0 1123
ENST00000476004 NUP214-006 protein_coding Homo_sapiens 0 309
ENST00000483497 NUP214-009 protein_coding Homo_sapiens 0 1306
ENST00000498010 NUP214-007 protein_coding Homo_sapiens 0 416
ENST00000526412 NUP214-012 processed_transcript Homo_sapiens 0 267
ENST00000530491 NUP214-023 retained_intron Homo_sapiens 0 267
ENST00000530863 NUP214-015 protein_coding Homo_sapiens 0 366

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