C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: IKAROS family zinc finger 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065433 Ikzf1-002 ENSMUSG00000018654 10090 + 11:11685925-11772112 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065433
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065433 0.654±0.04 0.325±0.08 0.250±0.00 7.016±2.78 0.593±0.00 0.361±0.06 0.357±0.09 2.834±2.18 1.267±0.38 0.307±0.44 0.403±0.14 0.284±0.08 0.074±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XP CIL_0008XP_0002 VISTA 11:11227967-11828770
CIL_0008P3 CIL_0008P3_0002 VISTA 11:11375621-11977027
CIL_0008XT CIL_0008XT_0002 VISTA 11:11399170-12000205
CIL_0007SD CIL_0007SD_0002 VISTA 11:11453227-12053958
CIL_0007MQ CIL_0007MQ_0003 UCNEbase 11:11528251-11753919
CIL_00089U CIL_00089U_0002 VISTA 11:11536402-12137998
CIL_0008KL CIL_0008KL_0002 VISTA 11:11661856-12262621
CIL_000642 CIL_000642_0002 CGP 11:11685003-11808962

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001779 IMP natural killer cell differentiation
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 TAS transcription factor complex
GO:0005721 IDA pericentric heterochromatin
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0030097 IMP hemopoiesis
GO:0030183 IMP B cell differentiation
GO:0030217 IMP T cell differentiation
GO:0030900 IMP forebrain development
GO:0040018 IGI positive regulation of multicellular organism growth
GO:0043565 IMP sequence-specific DNA binding
GO:0045660 IMP positive regulation of neutrophil differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0046982 IPI protein heterodimerization activity
GO:0048535 IMP lymph node development
GO:0048538 IMP thymus development
GO:0048541 IMP Peyer's patch development
GO:0048732 IMP gland development
GO:0051138 IMP positive regulation of NK T cell differentiation
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000125335 ikzf5-002 protein_coding Danio_rerio 0.00000004 66
ENSDART00000079011 ikzf5-001 protein_coding Danio_rerio 0.00000004 66
ENST00000331340 IKZF1-001 protein_coding Homo_sapiens 0 1751
ENST00000343574 IKZF1-201 protein_coding Homo_sapiens 0 1299
ENST00000346667 IKZF1-202 protein_coding Homo_sapiens 0 715
ENST00000349824 IKZF1-203 protein_coding Homo_sapiens 0 717
ENST00000357364 IKZF1-204 protein_coding Homo_sapiens 0 715
ENST00000359197 IKZF1-002 protein_coding Homo_sapiens 0 887
ENST00000413698 IKZF1-007 protein_coding Homo_sapiens 0 355
ENST00000438033 IKZF1-003 protein_coding Homo_sapiens 0 1299
ENST00000439701 IKZF1-004 protein_coding Homo_sapiens 0 887
ENST00000440768 IKZF1-205 protein_coding Homo_sapiens 0 891
ENST00000462201 IKZF1-011 retained_intron Homo_sapiens 0 462
ENST00000471793 IKZF1-005 retained_intron Homo_sapiens 0 1749
ENST00000484847 IKZF1-008 processed_transcript Homo_sapiens 4.2039e-45 185
ENST00000492119 IKZF1-010 processed_transcript Homo_sapiens 2e-18 97
ENST00000492782 IKZF1-009 processed_transcript Homo_sapiens 0 278
ENST00000612658 IKZF1-206 protein_coding Homo_sapiens 0 527
ENST00000615491 IKZF1-207 protein_coding Homo_sapiens 0 1077

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