C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: beta-transducin repeat containing E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000408038 BTRC-002 ENSG00000166167 9606 + 10:101354107-101557321 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastLungOvaryPlacentaTestisENST00000408038
Transcript ID Adrenal Brain Breast Lung Ovary Placenta Testis
ENST00000408038 1.733±0.00 0.945±0.00 1.852±0.08 1.274±0.12 0.936±0.21 1.194±0.00 1.591±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000940 CIL_000940_0001 VISTA 10:100919065-101519843
CIL_0007ZR CIL_0007ZR_0001 VISTA 10:101034855-101635629
CIL_00089J CIL_00089J_0001 VISTA 10:101185253-101786853
CIL_000942 CIL_000942_0001 VISTA 10:101206892-101808215
CIL_0007PC CIL_0007PC_0001 UCNEbase 10:101219422-101507851
CIL_0005NA CIL_0005NA_0001 CGP 10:101226195-101557321

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006470 ISS protein dephosphorylation
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0007165 TAS signal transduction
GO:0016032 TAS viral process
GO:0016055 IEA Wnt signaling pathway
GO:0016567 IDA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0019005 IDA SCF ubiquitin ligase complex
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031146 IBA SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031648 IMP protein destabilization
GO:0042752 IDA regulation of circadian rhythm
GO:0042753 ISS positive regulation of circadian rhythm
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043433 TAS negative regulation of sequence-specific DNA binding transcription factor activity
GO:0045862 IMP positive regulation of proteolysis
GO:0045879 TAS negative regulation of smoothened signaling pathway
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046983 IEA protein dimerization activity
GO:0048511 IEA rhythmic process
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111936 Btrc-202 protein_coding Mus_musculus 0 2724
ENSMUST00000065601 Btrc-201 protein_coding Mus_musculus 0 2566

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