C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 50
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065785 Trim50-001 ENSMUSG00000053388 10090 + 5:135353296-135368005 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000065785
Transcript ID Adipose Adrenal Bladder Brain Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000065785 0.034±0.02 0.049±0.00 0.005±0.00 0.033±0.00 0.050±0.02 0.022±0.01 0.028±0.02 0.016±0.00 0.519±0.22 0.092±0.06 0.268±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UT CIL_0005UT_0002 CGP 5:135353295-135376805

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0008152 IEA metabolic process
GO:0008270 IEA zinc ion binding
GO:0016235 IDA aggresome
GO:0016874 IEA ligase activity
GO:0070201 IDA regulation of establishment of protein localization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000285805 TRIM74-002 protein_coding Homo_sapiens 0 662
ENST00000323819 TRIM73-201 protein_coding Homo_sapiens 0 667
ENST00000333149 TRIM50-001 protein_coding Homo_sapiens 0 1391
ENST00000395244 TRIM74-001 protein_coding Homo_sapiens 0 676
ENST00000430211 TRIM73-002 protein_coding Homo_sapiens 0 665
ENST00000437796 TRIM73-001 protein_coding Homo_sapiens 0 667
ENST00000447409 TRIM73-202 protein_coding Homo_sapiens 0 682
ENST00000450434 TRIM73-003 protein_coding Homo_sapiens 0 551
ENST00000453152 TRIM50-002 protein_coding Homo_sapiens 0 1391
ENST00000483979 TRIM73-004 retained_intron Homo_sapiens 0 241
ENST00000493498 TRIM50-003 processed_transcript Homo_sapiens 0 379

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