C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family G (WHITE), member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000066175 Abcg5-001 ENSMUSG00000040505 10090 - 17:84658234-84683011 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverOvaryPlacentaENSMUST00000066175
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Ovary Placenta
ENSMUST00000066175 0.096±0.00 0.113±0.00 0.402±0.00 0.265±0.05 2.895±1.04 0.041±0.00 0.164±0.06 32.947±29.55 0.264±0.15 0.661±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XP CIL_0001XP_0002 CGP 17:84626496-84683011
CIL_0001XO CIL_0001XO_0002 CGP 17:84658234-84700333

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0007584 IEA response to nutrient
GO:0007588 IMP excretion
GO:0010212 IEA response to ionizing radiation
GO:0010949 IEA negative regulation of intestinal phytosterol absorption
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016324 IMP apical plasma membrane
GO:0017127 IMP cholesterol transporter activity
GO:0030299 IC intestinal cholesterol absorption
GO:0033344 IMP cholesterol efflux
GO:0042493 IEA response to drug
GO:0042632 IEA cholesterol homeostasis
GO:0045177 IDA apical part of cell
GO:0045796 IEA negative regulation of intestinal cholesterol absorption
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260645 ABCG5-001 protein_coding Homo_sapiens 0 1646
ENST00000405322 ABCG5-002 protein_coding Homo_sapiens 0 905
ENST00000409962 ABCG5-004 nonsense_mediated_decay Homo_sapiens 0 765
ENST00000486512 ABCG5-003 nonsense_mediated_decay Homo_sapiens 0 765

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