C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MyoD family inhibitor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000066368 Mdfi-001 ENSMUSG00000032717 10090 - 17:47815328-47834691 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000066368
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000066368 0.986±0.00 0.733±0.23 2.460±0.77 0.880±0.05 0.224±0.04 0.065±0.01 1.603±0.21 5.886±0.80 5.635±0.00 0.129±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000963 CIL_000963_0002 VISTA 17:47571879-48173076
CIL_00093V CIL_00093V_0002 VISTA 17:47614773-48215356
CIL_0008XI CIL_0008XI_0002 VISTA 17:47688296-48291797
CIL_0008IB CIL_0008IB_0002 VISTA 17:47708185-48309224
CIL_0007QG CIL_0007QG_0002 VISTA 17:47710565-48311720
CIL_0008F3 CIL_0008F3_0002 VISTA 17:47757242-48358147

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0007257 IDA activation of JUN kinase activity
GO:0008134 IPI transcription factor binding
GO:0009950 IMP dorsal/ventral axis specification
GO:0030111 IDA regulation of Wnt signaling pathway
GO:0030178 IGI negative regulation of Wnt signaling pathway
GO:0043392 IDA negative regulation of DNA binding
GO:0048704 IMP embryonic skeletal system morphogenesis
GO:0060707 IMP trophoblast giant cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230321 MDFI-001 protein_coding Homo_sapiens 0 708
ENST00000373050 MDFI-002 protein_coding Homo_sapiens 0 473
ENST00000373051 MDFI-008 protein_coding Homo_sapiens 0 800
ENST00000419164 MDFI-003 protein_coding Homo_sapiens 0 643
ENST00000432027 MDFI-005 protein_coding Homo_sapiens 0 555
ENST00000435476 MDFI-007 protein_coding Homo_sapiens 0 291

Loading